ZIMM | Zero-inflated mixture model for single-cell data | Machine Learning library

by epierson9 Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(6)Vulnerabilities Install Support

kandi X-RAY | ZIMM Summary

ZIMM is a Python library typically used in Artificial Intelligence, Machine Learning, Numpy applications. ZIMM has no bugs, it has no vulnerabilities and it has low support. However ZIMM build file is not available. You can download it from GitHub.

Algorithm code is contained in ZIMM.py. Z, model_params = ZIMM.fitModel(Y, k). where Y is the observed zero-inflated data, k is the desired number of clusters, and Z is the cluster assignments. This code requires pylab, scipy, numpy, and scikits.learn for full functionality.

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Quality

Security

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Support

ZIMM has a low active ecosystem.

It has 12 star(s) with 3 fork(s). There are 3 watchers for this library.

It had no major release in the last 6 months.

ZIMM has no issues reported. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of ZIMM is current.

Quality

ZIMM has 0 bugs and 0 code smells.

Security

ZIMM has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

ZIMM code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

ZIMM does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

ZIMM releases are not available. You will need to build from source code and install.

ZIMM has no build file. You will be need to create the build yourself to build the component from source.

ZIMM saves you 77 person hours of effort in developing the same functionality from scratch.

It has 200 lines of code, 10 functions and 1 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed ZIMM and discovered the below as its top functions. This is intended to give you an instant insight into ZIMM implemented functionality, and help decide if they suit your requirements.

Initialize k - means parameters .
Fit a zero - inflated mixture model .
Perform a multi - step optimization .
Compute an e - step embedding for each cluster .
Computes the probability of the posterior log - likelihood .
Compute integrals .
Function to decay objective function .
Compute the length of the logarithm .
Check if matrix_list contains NaN .
Exponential decay function .

Get all kandi verified functions for this library.

ZIMM Key Features

No Key Features are available at this moment for ZIMM.

ZIMM Examples and Code Snippets

No Code Snippets are available at this moment for ZIMM.

Community Discussions

Trending Discussions on ZIMM

JSON for loop only listing the last record

Checking, if items of one dataframe are inside a range, defined in another dataframe and have the same index

Save data in XML file in Python

Python, Catch value in text file

crontab does not run my python script

How to compare multiple fields in Elm?

QUESTION

JSON for loop only listing the last record

Asked 2020-Oct-18 at 17:38

I'm trying to store the state of vms in two servers and power the running vms down. Here is the code:

The script:

...

ANSWER

Answered 2020-Oct-18 at 17:38

The main problem is, you've multiple duplicate keys on your JSON i.e x (check it here) So when you try this

Source https://stackoverflow.com/questions/64416227

QUESTION

Checking, if items of one dataframe are inside a range, defined in another dataframe and have the same index

Asked 2020-Sep-21 at 14:36

I have two dataframes created from files:

And I want to check in wich range made out of DOY installed and DOY removed columns are values form Bias start column, but it neeeds to be done in groups made out of matching Station ID index from both dfs. After that I want to create third dataframe which will consist of all columns from second df and Reciever type selected based on range condition. Here is desired output:

and code:

...

ANSWER

Answered 2020-Sep-21 at 14:36

It is a merge_asof operation using the by parameter to work per StationID. Note that to perform this operation, the columns used need to be sorted. The rest is cosmetic to fit the expected output.

Source https://stackoverflow.com/questions/63993046

QUESTION

Save data in XML file in Python

Asked 2020-Jan-06 at 14:49

I am trying to save my data to an XML file. This data comes from a website where I want to collect the reviews. There are always five reviews per page, which I want to save in XML format in a file. The problem is that if I print out the XML tree with print(ET.tostring(root, encoding='utf8').decode('utf8')) then there are all five reviews that I want to have. But if I save them into the file with tree.write("test.xml", encoding='unicode') then I only see one review... Here is my code:

...

ANSWER

Answered 2020-Jan-06 at 14:49

Because your xml_tree(new_dict) exists inside of a for loop, the tree.write() method is being called multiple times overwriting your file.

Open your file in a (append) mode with open():

Source https://stackoverflow.com/questions/59613778

QUESTION

Python, Catch value in text file

Asked 2019-Mar-05 at 09:23

I have a file (output of fluiddynamic code) in which I want to get the value written just after a line that start with dilute dimensional Zimm longest

here is reported the interested lines:

...

ANSWER

Answered 2019-Mar-05 at 09:23

memo.dat:

Source https://stackoverflow.com/questions/54999076

QUESTION

crontab does not run my python script

Asked 2018-Jan-19 at 13:18

My python script is not running under my Crontab. But when i try to run it from the Terminal it works perfectly. I have placed this in the python script at the top:

...

ANSWER

Answered 2018-Jan-19 at 13:18

You should change you crontab line as such to get stdout and stderr saved to the file:

Source https://stackoverflow.com/questions/48339383

QUESTION

How to compare multiple fields in Elm?

Asked 2017-Jan-08 at 21:34

I'm currently writing a web-based vocabulary trainer in Elm. This requires sorting a list of words by a custom comparator.

The type I want to sort is:

...

ANSWER

Answered 2017-Jan-08 at 18:46

A more Elm-ish way of doing this kind of things is compositionally, thanks to the |> operator. The elm-ordering library provides the primitives that you need to do this kind of things, especially the Ordering.byField and Ordering.breakTiesWith functions.

As for the dates, my advice would be to use Date.toTime (the resulting values are comparable).

Bonus: full implementation of your ordering function available for testing here: https://runelm.io/c/xoz. You can see it's much simpler and more readable than yours...

Source https://stackoverflow.com/questions/41535288

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ZIMM

You can download it from GitHub.
You can use ZIMM like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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