baltic | backronymed adaptable lightweight tree import code | Data Visualization library

 by   evogytis Python Version: 0.2.2 License: GPL-3.0

kandi X-RAY | baltic Summary

kandi X-RAY | baltic Summary

baltic is a Python library typically used in Institutions, Learning, Administration, Public Services, Analytics, Data Visualization applications. baltic has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can install using 'pip install baltic' or download it from GitHub, PyPI.

baltic is a Python library for parsing phylogenetic trees. It takes newick, Nexus or nextstrain JSON trees and allows you to manipulate, explore and visualise them. baltic stands for Backronymed Adaptable Lightweight Tree Import Code if you like that sort of thing.
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            kandi-support Support

              baltic has a low active ecosystem.
              It has 73 star(s) with 27 fork(s). There are 7 watchers for this library.
              There were 4 major release(s) in the last 12 months.
              There are 17 open issues and 7 have been closed. On average issues are closed in 11 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of baltic is 0.2.2

            kandi-Quality Quality

              baltic has 0 bugs and 0 code smells.

            kandi-Security Security

              baltic has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              baltic code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              baltic is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              baltic releases are available to install and integrate.
              Deployable package is available in PyPI.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.
              baltic saves you 604 person hours of effort in developing the same functionality from scratch.
              It has 1406 lines of code, 61 functions and 6 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed baltic and discovered the below as its top functions. This is intended to give you an instant insight into baltic implemented functionality, and help decide if they suit your requirements.
            • Make a tree
            • Add a leaf node to the tree
            • Add a new node
            • Add a reticulation
            • Load data from a JSON file
            • Draws the tree
            • Traverse the tree
            • Make a tree from a JSON node
            • Returns external objects
            • Recursively collapse the tree
            • Perform a tree traversal
            • Untangle trees
            • Reduce the tree
            • Removes hanging nodes
            • Collapse a clade class
            • Return a new subtree
            • Convert a date to a datetime object
            • Finds a single type
            • Uncollapse a subtree
            • Return all TMRCA matrix for this node
            • Find the overlap between two collections
            • Rename tip objects
            • Set the absolute time of the tree
            Get all kandi verified functions for this library.

            baltic Key Features

            No Key Features are available at this moment for baltic.

            baltic Examples and Code Snippets

            baltic,Usage
            Pythondot img1Lines of Code : 18dot img1License : Strong Copyleft (GPL-3.0)
            copy iconCopy
            import baltic as bt
            
            # When called with a tree string the `make_tree()` function return a baltic tree object:
            
            treeString='((A:1.0,B:2.0):1.0,C:3.0);'
            myTree = bt.make_tree(treeString)
            
            # Otherwise you can import trees from newick, nexus or nextstrai  
            baltic,Installation
            Pythondot img2Lines of Code : 1dot img2License : Strong Copyleft (GPL-3.0)
            copy iconCopy
            pip install baltic
              

            Community Discussions

            QUESTION

            why is it that my object has no attribute?
            Asked 2022-Apr-03 at 01:15

            I'm new to Python (started a few days ago) and I've been trying to code Monopoly (with reference of a different user's code) and I can't seem to get past a specific error stating that my 'Game' object has no attribute 'square_number'

            ...

            ANSWER

            Answered 2022-Apr-02 at 23:21

            Your "Game" class only has constructor method and running_game method. The "square_number" is in the Player class and it is available upon initialization.

            In the code above, I have noticed that you are trying to call class method without initializing the object. For instance,

            Source https://stackoverflow.com/questions/71721666

            QUESTION

            Dropping multiples rows based on list of column values
            Asked 2021-Nov-16 at 15:54

            I am working on a World Bank dataset of Co2 Emission and GDP. I want to remove values of non countries from the dataframe.

            I tried using negation and reset_index as follow. But the rows are not getting removed. I want the rows to be removed where the country name in the column Country Name is from the list non_countries.

            ...

            ANSWER

            Answered 2021-Nov-16 at 15:13

            QUESTION

            Javascript: Sort data based on nested start_date and end_date
            Asked 2021-Sep-08 at 13:18

            I know my question is really common question but I did not find the right solution. I have fetched Event from open API. The api gives multiple events and also there are startDate & endDate. When I fetched the data, it gives all events but the start dates are not sorted. I want to make one helper function which will sort data by start date and return an Arrays of sort date. But I could not able to do that. I used javascript getTime for startDate and endDate and compare with them and tried to return the sortData but could not able to do that.

            PS: for date validation I am using date-fns

            Here is my code and I did not share my wrong approach.

            ...

            ANSWER

            Answered 2021-Sep-08 at 13:18

            This is a trivial sort with standard text sorting.

            No need to convert the date

            Source https://stackoverflow.com/questions/69103403

            QUESTION

            Scraping web data
            Asked 2021-Aug-12 at 09:45

            I'd like to scrape the data from a website: https://en.macromicro.me/charts/773/baltic-dry-index ,which comprises 4 data sets.

            I've discovered that the website use javascript to send request to https://en.macromicro.me/charts/data/773 to get the data,but for some reason i just can't get the data by using Postman or my script. i keep getting the result: {'success': 0, 'data': [], 'msg': 'error #240'}

            did I miss anything here? here is my code:

            ...

            ANSWER

            Answered 2021-Aug-12 at 08:23

            Missing Cookie in headers. Refresh the page to get cookies.

            Source https://stackoverflow.com/questions/68753741

            QUESTION

            Creating a loop to open links in sequence
            Asked 2021-Aug-09 at 06:17

            ANSWER

            Answered 2021-Aug-09 at 06:17

            You can do this easily with beautifulsoup.

            Since you haven't clearly mentioned what those links are, I assume that you are trying to extract the links under ul looking at our code.

            Here is the code using beautifulsoup. It gets you the links under

              from both the links mentioned.

            Source https://stackoverflow.com/questions/68707039

            QUESTION

            Using HashMaps to map a total and average value to a key
            Asked 2021-Mar-22 at 13:44

            I have a Country class and have read in data from a .csv file which contains many countries names, the region they're in, the population of each country, the area etc, and stored it in an ArrayList. I am carrying out a data analysis mostly using the java collections framework, and want to find both the total and average population for each region.

            I've figured using a HashMap is best for this, but I don't know how to go about this as I've never used one before in any complex way or with objects. I also know I'll have to change the datatype of the int to a long for the total population.

            ...

            ANSWER

            Answered 2021-Mar-22 at 13:44

            If you just want to group region with it's total population, then you need to modify your code a bit. The variable total should be declared inside your for loop and it should be initialized with the country's population.

            Source https://stackoverflow.com/questions/66745013

            QUESTION

            send() takes from 1 to 2 positional arguments but 3 were given (discord.py)
            Asked 2021-Mar-19 at 09:23

            i am trying to make it say the name of the user that did ~milk, it only produces the error when you type in discord ~milk here is the code that produces the error:

            ...

            ANSWER

            Answered 2021-Mar-19 at 09:17

            channel.send() takes only one argument (and the implicit self which makes it appear like 2)

            You can write it like this:

            Source https://stackoverflow.com/questions/66705391

            QUESTION

            How get data from the URL link using R
            Asked 2020-Oct-16 at 09:15

            I need to get information from the following link https://dashboard-baltic.electricity-balancing.eu/en/bids-activated/index?period=search&show=report&start=2020-01-01&end=2020-10-16&type=normal

            I tried following two methods, however with no result:

            ...

            ANSWER

            Answered 2020-Oct-16 at 09:15

            You can read the data directly into R by find out the link where the csv is stored. Since this is semi-colon delimited file we use read.csv2.

            Source https://stackoverflow.com/questions/64385968

            QUESTION

            geom_smooth plot labels cut out both at the left and right hand side in R
            Asked 2020-Sep-25 at 06:10

            I am making line graphs using ggplot and geom_smooth but my plotted line labels are getting beyond the plot area. Somehow I don't know how to reduce the size of the plot or shrinking the lines. My code is like this.

            ...

            ANSWER

            Answered 2020-Sep-25 at 06:10

            You can use xlim to extend x-axis on both the ends by 1 year.

            Source https://stackoverflow.com/questions/64058445

            QUESTION

            FatFs read/write in root work but not in subfolder
            Asked 2020-Sep-23 at 12:40

            Already thanks for your time.

            I'm a little lost on how can I debug a problem I have with FatFs: write then read files inside folder brings me invalid data. but on the root, it work flawessly.

            note:

            • I'm working on a bar-metal nrf52832 using FatFs 14.
            • The nrf52832 talk on spi to an external flash MX25L32 (4Mb, 512b/sector, 4096/block)
            • I have disabled the relative file path, so I use only absolute path.
              • (I'll join "ffconf.h")

            I have the following problem :

            • If I write then read a file on the root, it work flawlessly (tested with 10k file)
            • If I write then read a file in a subfolder I read somethings strange (even with small file).

            and here's the code that I use (cb_littlecodethatfail is called via an RTT terminal):

            ...

            ANSWER

            Answered 2020-Jul-29 at 08:42

            It's me again,

            The bug is inside the glue 'disk_write' function. As long as block was written in the right order, everythings worked well. But it's not always the case.

            sorry for my noobness, here's the implementation actual of the disk_write

            Source https://stackoverflow.com/questions/63136696

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install baltic

            Use package manager pip to install baltic:.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            pip install baltic

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            gh repo clone evogytis/baltic

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            git@github.com:evogytis/baltic.git

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