baltic | backronymed adaptable lightweight tree import code | Data Visualization library
kandi X-RAY | baltic Summary
kandi X-RAY | baltic Summary
baltic is a Python library for parsing phylogenetic trees. It takes newick, Nexus or nextstrain JSON trees and allows you to manipulate, explore and visualise them. baltic stands for Backronymed Adaptable Lightweight Tree Import Code if you like that sort of thing.
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Top functions reviewed by kandi - BETA
- Make a tree
- Add a leaf node to the tree
- Add a new node
- Add a reticulation
- Load data from a JSON file
- Draws the tree
- Traverse the tree
- Make a tree from a JSON node
- Returns external objects
- Recursively collapse the tree
- Perform a tree traversal
- Untangle trees
- Reduce the tree
- Removes hanging nodes
- Collapse a clade class
- Return a new subtree
- Convert a date to a datetime object
- Finds a single type
- Uncollapse a subtree
- Return all TMRCA matrix for this node
- Find the overlap between two collections
- Rename tip objects
- Set the absolute time of the tree
baltic Key Features
baltic Examples and Code Snippets
import baltic as bt
# When called with a tree string the `make_tree()` function return a baltic tree object:
treeString='((A:1.0,B:2.0):1.0,C:3.0);'
myTree = bt.make_tree(treeString)
# Otherwise you can import trees from newick, nexus or nextstrai
Community Discussions
Trending Discussions on baltic
QUESTION
I'm new to Python (started a few days ago) and I've been trying to code Monopoly (with reference of a different user's code) and I can't seem to get past a specific error stating that my 'Game' object has no attribute 'square_number'
...ANSWER
Answered 2022-Apr-02 at 23:21Your "Game" class only has constructor method and running_game method. The "square_number" is in the Player class and it is available upon initialization.
In the code above, I have noticed that you are trying to call class method without initializing the object. For instance,
QUESTION
I am working on a World Bank dataset of Co2 Emission and GDP. I want to remove values of non countries from the dataframe.
I tried using negation and reset_index
as follow. But the rows are not getting removed. I want the rows to be removed where the country name in the column Country Name
is from the list non_countries
.
ANSWER
Answered 2021-Nov-16 at 15:13Try this:
QUESTION
I know my question is really common question but I did not find the right solution. I have fetched Event from open API. The api gives multiple events and also there are startDate
& endDate
. When I fetched the data, it gives all events but the start dates are not sorted. I want to make one helper function which will sort data by start date and return an Arrays of sort date. But I could not able to do that. I used javascript getTime
for startDate and endDate and compare with them and tried to return the sortData but could not able to do that.
PS: for date validation I am using date-fns
Here is my code and I did not share my wrong approach
.
ANSWER
Answered 2021-Sep-08 at 13:18This is a trivial sort with standard text sorting.
No need to convert the date
QUESTION
I'd like to scrape the data from a website: https://en.macromicro.me/charts/773/baltic-dry-index ,which comprises 4 data sets.
I've discovered that the website use javascript to send request to https://en.macromicro.me/charts/data/773 to get the data,but for some reason i just can't get the data by using Postman or my script. i keep getting the result: {'success': 0, 'data': [], 'msg': 'error #240'}
did I miss anything here? here is my code:
...ANSWER
Answered 2021-Aug-12 at 08:23Missing Cookie
in headers.
Refresh the page to get cookies.
QUESTION
ANSWER
Answered 2021-Aug-09 at 06:17You can do this easily with beautifulsoup
.
Since you haven't clearly mentioned what those links
are, I assume that you are trying to extract the links
under ul
looking at our code.
Here is the code using beautifulsoup
. It gets you the links under
- from both the links mentioned.
QUESTION
I have a Country class and have read in data from a .csv file which contains many countries names, the region they're in, the population of each country, the area etc, and stored it in an ArrayList. I am carrying out a data analysis mostly using the java collections framework, and want to find both the total and average population for each region.
I've figured using a HashMap is best for this, but I don't know how to go about this as I've never used one before in any complex way or with objects. I also know I'll have to change the datatype of the int to a long for the total population.
...ANSWER
Answered 2021-Mar-22 at 13:44If you just want to group region with it's total population, then you need to modify your code a bit. The variable total
should be declared inside your for
loop and it should be initialized with the country's population.
QUESTION
i am trying to make it say the name of the user that did ~milk, it only produces the error when you type in discord ~milk here is the code that produces the error:
...ANSWER
Answered 2021-Mar-19 at 09:17channel.send()
takes only one argument (and the implicit self which makes it appear like 2)
You can write it like this:
QUESTION
I need to get information from the following link https://dashboard-baltic.electricity-balancing.eu/en/bids-activated/index?period=search&show=report&start=2020-01-01&end=2020-10-16&type=normal
I tried following two methods, however with no result:
...ANSWER
Answered 2020-Oct-16 at 09:15You can read the data directly into R by find out the link where the csv is stored. Since this is semi-colon delimited file we use read.csv2
.
QUESTION
I am making line graphs using ggplot and geom_smooth but my plotted line labels are getting beyond the plot area. Somehow I don't know how to reduce the size of the plot or shrinking the lines. My code is like this.
...ANSWER
Answered 2020-Sep-25 at 06:10You can use xlim
to extend x-axis on both the ends by 1 year.
QUESTION
Already thanks for your time.
I'm a little lost on how can I debug a problem I have with FatFs: write then read files inside folder brings me invalid data. but on the root, it work flawessly.
note:
- I'm working on a bar-metal nrf52832 using FatFs 14.
- The nrf52832 talk on spi to an external flash MX25L32 (4Mb, 512b/sector, 4096/block)
- I have disabled the relative file path, so I use only absolute path.
- (I'll join "ffconf.h")
I have the following problem :
- If I write then read a file on the root, it work flawlessly (tested with 10k file)
- If I write then read a file in a subfolder I read somethings strange (even with small file).
and here's the code that I use (cb_littlecodethatfail is called via an RTT terminal):
...ANSWER
Answered 2020-Jul-29 at 08:42It's me again,
The bug is inside the glue 'disk_write' function. As long as block was written in the right order, everythings worked well. But it's not always the case.
sorry for my noobness, here's the implementation actual of the disk_write
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