fbpca | Fast Randomized PCA/SVD | Machine Learning library
kandi X-RAY | fbpca Summary
kandi X-RAY | fbpca Summary
Fast Randomized PCA/SVD
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Top functions reviewed by kandi - BETA
- Test eigenvalues
- Generate eigens
- Generate a diffSNorms
- Multiply matrix A
- Test PCA
- Compute the principal components of A
- Calculate the difference between two columns
- Generate a diffSNormap
- Test the test PCA
- Test the test eigenvector
- Generates the eigenvalue of a matrix A
- Test the eigenvalue test
- Test test eigenvalue
- Test for the test_sparse function
- Test the test_sparse
- Run test_sparse
- Run test on dense vectors
- Test the diffSNorms
- Test the test suite
fbpca Key Features
fbpca Examples and Code Snippets
Community Discussions
Trending Discussions on fbpca
QUESTION
I am working with large matrices, like the Movielens 20m dataset. I restructured the online file such that it matches the dimensions mentioned on the page (138000 by 27000), since the original file contains indices that are more of the size (138000 by 131000), but contain a lot of empty columns. Simply throwing out those empty columns and re-indexing yields the desired dimensions.
Anyways, the snippet to cast the sparse csv file to a dense format looks like this:
...ANSWER
Answered 2019-Jul-25 at 11:37I think your problem lies in the todense()
call, which uses np.asmatrix(self.toarray(order=order, out=out))
internally.
toarray
creates its output with np.zeros
. (See toarray, _process_toarray_args)
So your question can be reduced to: Why doesn't np.zeros
allocate enough memory?
The answer is probably lazy-initialization
and zero pages
:
Why does numpy.zeros takes up little space
Linux kernel: Role of zero page allocation at paging_init time
So all zero-regions in your matrix are actually in the same physical memory block and only a write to all entries will force the OS to allocate enough physical memory.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install fbpca
You can use fbpca like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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