consensus | Filecoin consensus work | Blockchain library
kandi X-RAY | consensus Summary
kandi X-RAY | consensus Summary
The state of the Filecoin network is maintained in a blockchain. It is updated as new blocks are mined by a chosen network participant at regular intervals. This "leader" earns FIL for this and is chosen from the set of participants in the Filecoin network with a probability proportional to how much storage this participant is verifiably providing the network. In proceeding thus, block creation.
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Top functions reviewed by kandi - BETA
- Run multiple attacks
- Run a grind
- Negative nogrinding
- Run the simulation
- Simulate the attack
- Create a new node
- Calculate the weight of a matrix
- Counts the number of possible solutions that have the given number of times
- This function calculates the LookFwd algorithm
- Calculate the ratio of an objective
- This function calculates the binomial sum of two random numbers
- Print the summary of a single node
- Calculate the sum of low values for a given info
- R grinds a runsim
- Given a node returns a list of new branches
- Calculates the winners of the chain
- Calculates the Poisson PR
- Compute the binomial distance between two random numbers
- Calculate the probability for a given distribution
- Calculates the SJ statistic for a given number of slots
- Grindicate the attack with a greedy algorithm
- Plot fork probabilities
- Compute the probability for the given function
- Generate a basic default configuration
- Grindly grind the attack
- LOOKFWD write
consensus Key Features
consensus Examples and Code Snippets
Community Discussions
Trending Discussions on consensus
QUESTION
I am writing a snakemake pipeline to eventually identify corona virus variants.
Below is a minimal example with three steps:
...ANSWER
Answered 2021-Jun-10 at 07:54I think the problem is that rule catFasta
doesn't contain the wildcard barcode
. If you think about it, what job name would you expect in {wildcards.barcode}.{rule}.{jobid}
?
Maybe a solution could be to add to each rule a jobname
parameter that could be {barcode}
for guppyplex
and minion
and 'all_barcodes'
for catFasta
. Then use --jobname "{params.jobname}.{rule}.{jobid}"
QUESTION
I am writing a snakemake to produce Sars-Cov-2 variants from Nanopore sequencing. The pipeline that I am writing is based on the artic network, so I am using artic guppyplex
and artic minion
.
The snakemake that I wrote has the following steps:
- zip all the
fastq
files for all barcodes (rulezipFq
) - perform read filtering with
guppyplex
(ruleguppyplex
) - call the
artic minion
pipeline (ruleminion
) - move the stderr and stdout from qsub to a folder under the working directory (rule
mvQsubLogs
)
Below is the snakemake that I wrote so far, which works
...ANSWER
Answered 2021-Jun-08 at 15:40The rule that fails is rule guppyplex
, which looks for an input in the form of {FASTQ_PATH}/{{barcode}}
.
Looks like the wildcard {barcode}
is filled with barcode49/barcode49.consensus.fasta
, which happened because of two reasons I think:
First (and most important): The workflow does not find a better way to produce the final output. In rule catFasta
, you give an input file which is never described as an output in your workflow. The rule minion
has the directory as an output, but not the file, and it is not perfectly clear for the workflow where to produce this input file.
It therefore infers that the {barcode}
wildcard somehow has to contain this .consensus.fasta
that it has never seen before. This wildcard is then handed over to the top, where the workflow crashes since it cannot find a matching input file.
Second: This initialisation of the wildcard with sth. you don't want is only possible since you did not constrain the wildcard properly. You can for example forbid the wildcard to contain a .
(see wildcard_constraints
here)
However, the main problem is that catFasta
does not find the desired input. I'd suggest changing the output of minion
to "nanopolish/{barcode}/{barcode}.consensus.fasta"
, since the you already take the OUTDIR from the params, that should not hurt your rule here.
Edit: Dummy test example:
QUESTION
I want to build a consensus sequence from several sequences in python and I'm looking for the most efficient / most pythonic way to achieve this.
I have a list of strings like this:
...ANSWER
Answered 2021-Jun-06 at 08:09If you already have the position frequency matrix, you could process it as a pandas DataFrame. I chose to orient it such that the alphabet is the index (note the transpose
call at the end):
QUESTION
I'm trying to add a new organization to Fabric's v2.2 test-network. When I execute the command (on configUpdate.sh; env vars are correctly setup):
...ANSWER
Answered 2021-May-31 at 07:10edit your /etc/hosts
like these,add the following content:
QUESTION
I think I'm getting close but I can't figure out why my code isn't working as expected. I want to scrape the data from the first page, then click the next
(arrow) button and move to the next page and do the same and so on until the next
arrow button is greyed out, at which point the driver should quit. Any help would be much appreciated. Here is the code:
ANSWER
Answered 2021-May-22 at 05:43It appears that, even now, you haven't tested any smaller pieces of your code. Look at your logic:
QUESTION
I'm looking for a way to add new members to existing Aeron cluster without reconfiguring existing ones.
It seems cluster members are defined statically during startup as described in the Cluster Tutorial:
...ANSWER
Answered 2021-May-20 at 19:31Yes, it is possible! The context should be built like this:
QUESTION
When using google style docstrings and type annotations there's a double up of the type hints.
Is there any community consensus on how to avoid this?
Annoying double up of types:
...ANSWER
Answered 2021-Jan-18 at 05:17This is very much IMHO, but I don't think enumerating all the parameters in the docstring has a lot of value if you have decent names and type annotations.
QUESTION
I compiled the latest version of the node "basic-pow" from the substrate recipes, run the node using the command "./basic-pow --alice" so i have the authority role, but it never produces blocks, it prepared the first block but never imported it and that's it! Any idea how to debug this issue?!
...ANSWER
Answered 2021-May-02 at 14:59according to this ticket on Github https://github.com/substrate-developer-hub/recipes/issues/432, it is confirmed broken.
// edit: A basic solution was added to the ticket.
QUESTION
I've been working on several projects lately as part of a job as developer for small startups and I've come across this question several times by now. What to do when you have an entity that consists of a planification and later the actual thing?
As an example let's think of a company wanting to have a record of all their security drills. Of course this means that someone will make a planification for a drill, perhaps choose a date and time for it and the people that will partake in it. This accounts for the planification of the entity. After a while the drill actually happens, and so we want to have a record of the actual date and time of the occurrence (to keep it simple, let's assume the people in the planification are always the same as the actual participants).
Example:
I've seen this same situation in lots of other practical examples, training planning and actual training, scheduled maintenance and actual maintenance, estimated budget and actual fees, etc. Sometimes we've solved this issues by using boolean attributes such as "planned", "done", "completed" or "approved" in one entity. Other times we used separate entities, but haven't quite reached a consensus of what is the better option.
What do you think would be the best option for this kind of problem? A PlanificationEntity and an actual Entity? Just a boolean?
...ANSWER
Answered 2021-May-01 at 15:34It totally depends on what is being planned, so there is no single answer.
In your case, drills seem to accumulate information over time and to change state. There seems to be a separate drill every time you do planning and only that drill is executed. You might want to keep only the current state, but I would generally want to keep transition tables to know when something happens.
A variation might be a class or a training, where there is a standard training. That might be stored as an entity (say in trainings
). You would then have a training_schedule
table, which could have past and future dates -- as well as a unique id. Then the participants would be linked to the training_schedule
.
Yet another variation is a budget versus actuals. In this case, the budget is in many ways its own entity, that you want to name and keep over time. The actuals accumulate and you want to compare them. That would be a different data model, because there can be multiple budgets active at the same time (the original one for the year and the updated budget based on actuals that have already happened).
QUESTION
I have a movieDetails.json database and the collection name is a movie then our teacher wants us to Display the number of movies based on the number of directors a movie has a. Hint you might have to use the javascript function split Since the director is not an array, it is only a string so I can't count how many directors are there because it will always come out as 1 since its a string so I want to split that string so that I can get an array so that I can count it. But unfortunately, I don't know the query that will solve this problem. ex. of expected output:
...ANSWER
Answered 2021-Apr-28 at 11:45Demo - https://mongoplayground.net/p/y3kvFnocWKn
Use aggregation query
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Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install consensus
You can use consensus like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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