fully-reproducible | fully reproducible

 by   ibab Python Version: Current License: No License

kandi X-RAY | fully-reproducible Summary

kandi X-RAY | fully-reproducible Summary

fully-reproducible is a Python library typically used in Template Engine, Latex applications. fully-reproducible has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

This is an example of a fully reproducible research paper using Github, Python, jinja2 and travis. On each git push, travis checks out this repository and executes the run.py script. The variables defined in that script are then made available to the jinja2 template paper.tex (which contains the LaTeX code for a research paper, with template fields for values that should be filled in from the script). Travis fills in the template and compiles paper.tex into a PDF file, which it then uploads to the gh-pages branch of this repository. (See for the rendered web page) This means that each stage of the analysis is represented as a git commit with a corresponding PDF file. Once all researchers agree on a commit that should represent the final version of their paper, they can use git tag to mark it as the official final version. When the paper is in review, corrections can in turn be marked with git tag. All of this makes it very easy for researchers to collaborate. For example, they can make use of Github's pull request feature to enable other researchers in their group to have a look at what has been changed and what the result in the paper is before they accept the change. This not only makes it more likely that mistakes are spotted early on, but also increases the effectiveness of the group ("Why don't you make use of X?").
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            kandi-support Support

              fully-reproducible has a low active ecosystem.
              It has 11 star(s) with 1 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              fully-reproducible has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of fully-reproducible is current.

            kandi-Quality Quality

              fully-reproducible has 0 bugs and 0 code smells.

            kandi-Security Security

              fully-reproducible has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              fully-reproducible code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              fully-reproducible does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              fully-reproducible releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              It has 105 lines of code, 3 functions and 3 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed fully-reproducible and discovered the below as its top functions. This is intended to give you an instant insight into fully-reproducible implemented functionality, and help decide if they suit your requirements.
            • Format a table .
            • Escape latex characters .
            • Convert value to SI .
            Get all kandi verified functions for this library.

            fully-reproducible Key Features

            No Key Features are available at this moment for fully-reproducible.

            fully-reproducible Examples and Code Snippets

            No Code Snippets are available at this moment for fully-reproducible.

            Community Discussions

            Trending Discussions on fully-reproducible

            QUESTION

            Include external R script in roxygen2 documentation
            Asked 2020-May-08 at 01:38

            When developing packages, I often have R scripts stored in the inst directory that produce data objects then included in the package, i.e. stored as someObj.rda in the data directory.

            These objects, in turn, have R scripts with roxygen2 headers for documentation (e.g. someObj.R). Ideally, I would like to include a line in the roxygen2 header that sources and formats the script as code, OUTSIDE of examples. Yes, I could copy the lines in, but in the DRY principle, it would be nice to have the documentation include the code automatically.

            I have tried the following with no success:

            ...

            ANSWER

            Answered 2020-May-08 at 01:38

            First, I would agree with Hong Ooi and say that in general you shouldn't put it in inst/; that is copied into the user's installation. I follow the advice in Hadley Wickham's R Packages and put them in a folder called data-raw/ (which you then add to .Rbuildignore). However, for the use case you further describe in the edits to your question, I can see why you would want to put the script in inst/ to distribute to your users.

            But, on to the problem at hand. You can do this by instead using @evalRd and adding the \details{} part in rdScript(). I set up a dummy package foo with the file inst/bar.R with the following code in it:

            Source https://stackoverflow.com/questions/61669665

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install fully-reproducible

            You can download it from GitHub.
            You can use fully-reproducible like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            CLONE
          • HTTPS

            https://github.com/ibab/fully-reproducible.git

          • CLI

            gh repo clone ibab/fully-reproducible

          • sshUrl

            git@github.com:ibab/fully-reproducible.git

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