pyimagej | Use ImageJ from Python | Machine Learning library

by imagej Python Version: 1.4.1 License: Non-SPDX

X-Ray Key Features Code Snippets(1)Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | pyimagej Summary

pyimagej is a Python library typically used in Artificial Intelligence, Machine Learning, Deep Learning, OpenCV, Numpy, Jupyter applications. pyimagej has no bugs, it has no vulnerabilities and it has low support. However pyimagej build file is not available and it has a Non-SPDX License. You can install using 'pip install pyimagej' or download it from GitHub, PyPI.

PyImageJ provides a set of wrapper functions for integration between ImageJ2 and Python. It also supports the original ImageJ API and data structures. A major advantage of this approach is the ability to combine ImageJ and ImageJ2 with other tools available from the Python software ecosystem, including NumPy, SciPy, scikit-image, CellProfiler, OpenCV, ITK and many more.

Support

Quality

Security

License

Reuse

Support

pyimagej has a low active ecosystem.

It has 357 star(s) with 60 fork(s). There are 21 watchers for this library.

It had no major release in the last 12 months.

There are 44 open issues and 163 have been closed. On average issues are closed in 248 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of pyimagej is 1.4.1

Quality

pyimagej has 0 bugs and 0 code smells.

Security

pyimagej has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

pyimagej code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

pyimagej has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

pyimagej releases are not available. You will need to build from source code and install.

Deployable package is available in PyPI.

pyimagej has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

It has 717 lines of code, 69 functions and 6 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed pyimagej and discovered the below as its top functions. This is intended to give you an instant insight into pyimagej implemented functionality, and help decide if they suit your requirements.

Create a JPype JVM
Sets the jars env
Copy a RAI into a numpy array
Check if an array is an array - like object
Run a script
Create JObjectArray from arguments
Create a slice from rai
Check if the index is within source range
Add converters
Convert Java data into a Python object
Check that the Python executable matches
Execute a command
Convert given dimensions to Python types
Convert a labeling to an image
Create ndarray from image
Convert xarray to image
Convert xarray to a dataset
Check if xarray is an array - like object
Convert Java data to Python object
Retrieve axis types from rai
Convert Image to a Labeling object
Rebuild an image
Assign axes to dataArray
Convert detections to napari
Process a list of detections
Convert a Java image into a ndarray
Convert detections to ImageJ

Get all kandi verified functions for this library.

pyimagej Key Features

No Key Features are available at this moment for pyimagej.

pyimagej Examples and Code Snippets

Access FileSaver from pyimagej

Python

Lines of Code : 9

License : Strong Copyleft (CC BY-SA 4.0)

Copy

ij.io().save(myImage, filePath)

import imagej
from scyjava import jimport
ij = imagej.init(...) # replace '...' with desired parameters here
FileSaver = jimport('ij.io.FileSaver')
imp = ... # get or make an ImagePl

Community Discussions

Trending Discussions on pyimagej

Access FileSaver from pyimagej

QUESTION

Access FileSaver from pyimagej

Asked 2021-Apr-09 at 23:08

How can one access FileSaver from pyimagej?

Everything that I see online is something like this:

...

ANSWER

Answered 2021-Apr-09 at 23:08

If your goal is to save an image to disk, use this:

Source https://stackoverflow.com/questions/67029248

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pyimagej

Jump into the documentation and tutorials to get started!.
PyImageJ can be installed using conda. Here is how to create and activate a new conda environment with PyImageJ available:. Alternately, it is possible to install PyImageJ with pip. For detailed installation instructions and requirements, see Install.md.

Support

The Scientific Community Image Forum is the best place to get general help on usage of PyImageJ, ImageJ2, and any other image processing tasks. Bugs can be reported to the PyImageJ GitHub issue tracker.

Find more information at: