singlet | Single cell RNA Seq data analysis

 by   iosonofabio Python Version: 0.5 License: MIT

kandi X-RAY | singlet Summary

kandi X-RAY | singlet Summary

singlet is a Python library. singlet has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install singlet' or download it from GitHub, PyPI.

Single cell RNA-Seq analysis with quantitative phenotypes.
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            kandi-support Support

              singlet has a low active ecosystem.
              It has 10 star(s) with 5 fork(s). There are 6 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 1 open issues and 5 have been closed. On average issues are closed in 58 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of singlet is 0.5

            kandi-Quality Quality

              singlet has 0 bugs and 0 code smells.

            kandi-Security Security

              singlet has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              singlet code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              singlet is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              singlet releases are not available. You will need to build from source code and install.
              Deployable package is available in PyPI.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.
              It has 7090 lines of code, 579 functions and 79 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed singlet and discovered the below as its top functions. This is intended to give you an instant insight into singlet implemented functionality, and help decide if they suit your requirements.
            • Plots features from statistics
            • Update plot properties
            • Create a new Series containing the elements in test_elements
            • Set metadata from another object
            • Plot a histogram plot
            • Return unique features
            • Return a new MultiIndex with new indexes
            • Fill missing values
            • Instantiates the counts
            • Normalize the population
            • Parse a dataset file
            • Calculate the Lshwnn
            • Compute TSNE
            • Parse counts table
            • Initialize from a dataset
            • Apply label propagation
            • Bins the histogram
            • Plot distribution distributions
            • Generate a random forest classifier
            • Plot group abundance changes
            • Normalize the counts table
            • Merge duplicate duplicates
            • Plot coverage
            • Compute the Leiden algorithm
            • Compute principal components principal components
            • Subsample samples from the dataset
            Get all kandi verified functions for this library.

            singlet Key Features

            No Key Features are available at this moment for singlet.

            singlet Examples and Code Snippets

            No Code Snippets are available at this moment for singlet.

            Community Discussions

            QUESTION

            JPA single-table inheritance mapping and two relationships to sub classes fails with unexpected result (Hibernate )
            Asked 2022-Feb-23 at 11:37

            We have a simple single table mapping, a ship with images and documents (both sub classes of an attachment) attached to it:

            ...

            ANSWER

            Answered 2022-Feb-23 at 11:37

            It's a bug in all Hibernate 5.x versions.

            I don’t know which HHH fixed this or if we even tagged a commit properly. We just figured that this was wrong in Hibernate 5.x so we fixed it at some point.

            See here:

            https://discourse.hibernate.org/t/two-relationships-to-single-table-inheritance-sub-classes-failing-with-hibernate-5-3/6012

            Source https://stackoverflow.com/questions/70913994

            QUESTION

            R: Errors and problems executing functions using lapply / map -- won't read input list or write output files
            Asked 2021-Sep-22 at 16:36

            I posted last week about how to replace values in one dataframe with value from another dataframe if conditions are met to create my desired result on a single set of data (which I have since solved). Now, I am trying to create a loop that can be executed for all the files I have in a folder.

            Briefly, each set of data has a matching pair .tsv files: One of the raw data, and one of the means of the replicates (specified in the instrument software prior to exporting .tsv files). An example pairing would look like "072621Liver1.tsv" (the raw data file) and "072621Liver1_replicates.tsv" (means data). The previous example I posted describes how I created a single tibble from the two files.

            Now, I am struggling to batch process all the paired files in my data set. I posted my best solution to this so far, but I'm still getting error messages like the one below.

            ...

            ANSWER

            Answered 2021-Sep-22 at 16:36

            To get the second part to run, need to use mapply like in this example.

            Source https://stackoverflow.com/questions/69275357

            QUESTION

            Validate scope for transient inside singleton in .net core?
            Asked 2021-Jun-21 at 13:49

            I have 3 interfaces ( for singleton/scoped/transient) :

            ...

            ANSWER

            Answered 2021-Jun-21 at 13:49

            I suggest reading this first: When are .NET Core dependency injected instances disposed?

            (Preface: My answer assumes that service implementations never dispose of any injected services themselves.)

            Why does .net core forbids injecting a shorter lifetime (scoped) services raising an exception, while allowing transient to be injected to a singleton?

            • The lifetime of a transient service is the same as the container it's instantiated inside.
              • Transient services can be instantiated in either the root-scope/root-container (where singletons are) or inside a scoped container.
              • The lifetime of a new transient service instance injected into a singleton is the lifetime of the singleton's container (usually the root container or root-scope).
                • That is, the transient instance will be disposed-of only when the root container is disposed, usually during application shutdown (IHost.Dispose())
              • The lifetime of a new transient service instance injected into a scoped service is the lifetime of that scope container.
                • That is, the transient instance will be disposed-of only when the scope is disposed (in ASP.NET Core, that's at the end of the HTTP request lifetime).
              • The lifetime of a new transient service injected into another transient service is the lifetime of the ultimate consumer which is constructed by the DI provider.

            In short: the lifetime of a transient service is the same as the service it's injected into - not longer, not shorter. That's why it's allowed.

            Whereas the lifetime of a scoped service is shorter than the root-scope/root-container's lifetime, and the root-scope/root-container is used for holding singleton instances, therefore a scoped service cannot be consumed by a singleton (more importantly it's because child scopes don't exist in the context of the root scope).

            Source https://stackoverflow.com/questions/68068900

            QUESTION

            How to fix this Maximum depth exceeded error with useEffect and useState?
            Asked 2021-Jun-15 at 18:54

            I have events which is pulled from redux, and if the events array contains data, then updateData will be used to filter events into the state var data.

            I have data and events both added to the dependency array as talked about here. but I'm still getting this error:

            ...

            ANSWER

            Answered 2021-Jun-15 at 18:54

            Because you are executing useEffect callback whenever data changes and you are changing data in useEffect callback.

            Remove data as dependency.

            Use this code to fix it

            Source https://stackoverflow.com/questions/67991891

            QUESTION

            SAS identifying singlets in by group not working as intended
            Asked 2021-Jun-08 at 15:00

            I am trying to delete singlets from a certain by group. This is my code:

            ...

            ANSWER

            Answered 2021-Jun-08 at 15:00

            QUESTION

            Is it possible to force a class to be instantiated by singleton-only
            Asked 2021-May-30 at 06:17

            When I code with C++11, I usually use the design pattern Singleton. Here is how I design my Singleton:

            ...

            ANSWER

            Answered 2021-May-30 at 06:17

            You can use CRTP pattern to achieve this

            Source https://stackoverflow.com/questions/67757750

            QUESTION

            org.hibernate.MappingException: Unknown entity - Hibernate, SpringBoot, DTO pattern
            Asked 2021-Apr-12 at 11:23

            I am trying to build a simple SpringBoot and Hibernate app using DAO and DTO pattern.

            I am trying to save a list of users to the database.

            When I am using User class it works fine, but when I am trying to use DTO CreateUserDto class I am getting the following error:

            "Unknown entity: com.app.sportapp.dto.CreateUserDto; nested exception is org.hibernate.MappingException: Unknown entity: com.app.sportapp.dto.CreateUserDto"

            There is a SingleTable inheritance where Player class and Coach class inherit User class.

            User.java

            ...

            ANSWER

            Answered 2021-Apr-12 at 10:45

            The error happens because you are treating a DTO as an entity. Remove the JPA annotations from the DTOs and don't use those classes for connecting to the db.

            You will convert the results from your queries from entities to DTO and vice-versa.

            I would also suggest to have a look at Mapstruct for the creation of DTO. This will probably make it easier to separate the entities from the DTOs.

            Source https://stackoverflow.com/questions/67056309

            QUESTION

            Create separate CSV's from array (PHP)
            Asked 2020-Dec-02 at 08:46

            I am trying to create multiple csv from a given source (i.e array).

            It works with sample data but it does not work with the actual data.

            here is the code :-

            ...

            ANSWER

            Answered 2020-Dec-02 at 08:46

            There are a few problems with the script, I've changed the way it loops over the data and now it loops over the $arraysource using a foreach loop. Then for each loop it outputs that set of data to the CSV file. I've also changed the file name to include the corresponding value from $keycompare so the file name is more relevant. You can change the values in $headers to be the actual names of the fields, these are just to show how to do it...

            Source https://stackoverflow.com/questions/65104540

            QUESTION

            JSON add value on click
            Asked 2020-Jan-28 at 03:20

            I'm trying to make a site of restaurant and now doing some table reservation. So far have one problem: I have a JSON of tables and want to add date (day/time) to it, when table was clicked. The problem's next - when I click on some table, the date adds to all JSON elements. And I wand to add it only to the element I clicked. Here is link to codepen: https://codepen.io/wilchilly/pen/qBEvegW (To see the result click on some table and open console)

            My HTML:

            ...

            ANSWER

            Answered 2020-Jan-26 at 22:54

            Just use the index from the iteration on table creation as id (or any attr you like) for example (you will probably need a classic for or a foreach) and then, in the event you attached pass the click event as param. Finally you just use the event.target to get the id (or the attr you choose) of the element and use it in the setDate func.

            Source https://stackoverflow.com/questions/59923318

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install singlet

            To get the latest stable version, use pip:.

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            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            Install
          • PyPI

            pip install singlet

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            https://github.com/iosonofabio/singlet.git

          • CLI

            gh repo clone iosonofabio/singlet

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            git@github.com:iosonofabio/singlet.git

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