entrez | simple Python interface to the amazing NCBI databases | Database library
kandi X-RAY | entrez Summary
kandi X-RAY | entrez Summary
A simple Python interface to query the biological databases kept at the NCBI. It uses the Entrez Programming Utilities (E-utilities), nine server-side programs that access the Entrez query and database system at the National Center for Biotechnology Information (NCBI).
Support
Quality
Security
License
Reuse
Top functions reviewed by kandi - BETA
- Sample from database
- Yield the results of a tool
- Select the elements selected by the tool
- Generate a list of SNPs
- Returns a generator of the results of the eutils query
- Example application
- Search for a search term
- Prints out duplicates
- Parses the input raw data
- Sample data
- Search for a given term
- Sample the database
- Sample
- Sample a single protein
- Extract the amino acid sequence
- Takes a sequence of accessions and converts to gene name
- Reads the accessions from a list of files
entrez Key Features
entrez Examples and Code Snippets
Community Discussions
Trending Discussions on entrez
QUESTION
I am new on Flutter and I would like to set up a form. This is my code:
...ANSWER
Answered 2021-Oct-06 at 09:51Try below code I think your problem has been solved. refer Textfield here
QUESTION
I have multiple data frames with the following format:
...ANSWER
Answered 2022-Mar-30 at 19:26One option involving dplyr
and purrr
could be:
QUESTION
my program fails after upgrading to python pandas version 1.4.0 or 1.4.1 with the following traceback :
...ANSWER
Answered 2022-Mar-10 at 22:14Same error that could only be resolved by downgrading to pandas version 1.3.5, if you're using pip:
QUESTION
I have to do a simple calculator +
, -
, *
and /
on PowerShell for my coding introduction course. Why my Variable Valeur1
& Valeur2
don't remain intact during the integer validation ? My 4 options give a random answer and don't remember the initial value of my 2 Read-Host
Variables.
ANSWER
Answered 2022-Feb-28 at 16:03From the Int32.TryParse(String, Int32)
Documentation:
result
Int32
When this method returns, contains the 32-bit signed integer value equivalent of the number contained ins
, if the conversion succeeded, or zero if the conversion failed.
When you do [ref]$OK
, if the conversion succeeds, this variable will hold the parsed result of your .TryParse
operation, but, you're overwriting this value on your if
and else
conditions ($OK = $true
and $OK = $false
).
Furthermore, the output from the .TryParse
method will be $true
/ $false
depending on the success of the operation (this boolean will be assigned to $valeur1
and $valeur2
since both variables have assigned this operation).
Returns
Boolean
true
ifs
was converted successfully; otherwise,false
.
Here is a simplified, working, variation of your code. It's worth mentioning that, since you're performing 2 parse operations, a function (ParseInput
) holding the same logic would make more sense so that the code is not repeated.
QUESTION
I created var_nt
dataframe by subsetting tx_df
columns based on row variant
- "J3", "J10", "J11", "J13".
Then, I converted the var_nt
dataframe to a GRanges
object (varnt_grange
) using the makeGRangesFromDataFrame
function.
Now, I want to write a for loop to collapse the varnt_grange
into a single vector.
ANSWER
Answered 2022-Feb-19 at 23:15On each iteration, you are inadvertently rewriting over the same object, repeatedly. Instead, you can iterate over the values in gene.list$entrez using lapply
QUESTION
I have a text with hyperlink(s) as below.
...ANSWER
Answered 2022-Feb-16 at 21:54Unfortunately that isn’t possible in Excel (and hence not in Excel::Writer::XLSX). It is only possible to have one hyperlink per cell.
QUESTION
here's the situation
I have a select element in my html code, with many option. One of these options is "Other". What I want is, when I select "Other", without refreshing the page, display an input element right under the select one with JS. The problem is that I have to refresh the page to see the change. Can you help me? :)
There's my code :
...ANSWER
Answered 2022-Feb-10 at 08:48You have to add an eventlistener.
QUESTION
I have a large list data
with 300 names.
For eg:
ANSWER
Answered 2022-Feb-03 at 17:57We may loop over the list
and apply the bitr
QUESTION
ANSWER
Answered 2022-Jan-22 at 08:06Use visibility
property
The visibility CSS property shows or hides an element without changing the layout of a document.
Use line-height: 32px;
to set the height of the message which indeed will set the gap between two inputs.
You can either toggle the inline style
QUESTION
i am having a bit of trouble here, plus i am new to using numpy. what i want to do is reorder the array T in V from high to low and changing the highest number to -1 everytime in the array T without using unbuilt functions i would truly appreciate any help, thank you.
...ANSWER
Answered 2021-Dec-18 at 14:28For n == 5 I created both arrays as:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install entrez
You can use entrez like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
Support
Reuse Trending Solutions
Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items
Find more librariesStay Updated
Subscribe to our newsletter for trending solutions and developer bootcamps
Share this Page