biocode | Bioinformatics code libraries and scripts
kandi X-RAY | biocode Summary
kandi X-RAY | biocode Summary
biocode is a Python library. biocode has no vulnerabilities, it has a Permissive License and it has low support. However biocode has 3 bugs and it build file is not available. You can install using 'pip install biocode' or download it from GitHub, PyPI.
Bioinformatics code libraries and scripts
Bioinformatics code libraries and scripts
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Quality
Security
License
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biocode has a low active ecosystem.
It has 389 star(s) with 220 fork(s). There are 32 watchers for this library.
There were 1 major release(s) in the last 12 months.
There are 22 open issues and 36 have been closed. On average issues are closed in 102 days. There are 4 open pull requests and 0 closed requests.
It has a neutral sentiment in the developer community.
The latest version of biocode is 0.11.0
Quality
biocode has 3 bugs (2 blocker, 0 critical, 1 major, 0 minor) and 878 code smells.
Security
biocode has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
biocode code analysis shows 0 unresolved vulnerabilities.
There are 14 security hotspots that need review.
License
biocode is licensed under the MIT License. This license is Permissive.
Permissive licenses have the least restrictions, and you can use them in most projects.
Reuse
biocode releases are available to install and integrate.
Deployable package is available in PyPI.
biocode has no build file. You will be need to create the build yourself to build the component from source.
biocode saves you 7502 person hours of effort in developing the same functionality from scratch.
It has 15488 lines of code, 540 functions and 180 files.
It has high code complexity. Code complexity directly impacts maintainability of the code.
Top functions reviewed by kandi - BETA
kandi has reviewed biocode and discovered the below as its top functions. This is intended to give you an instant insight into biocode implemented functionality, and help decide if they suit your requirements.
- Process input files
- Compare two DNA sequences
- The genes of this node
- Compare two CDS files
- Extract features from a GFF3 file
- Parse a single functional annotation
- Add a dbxref
- Convert a column string to a dictionary
- Add features to aragorn
- Parse blast file
- Return the longestorf of the mRNA sequence
- Print a gff3 format for each assembly
- Parse the evidence from a log file
- Plot a VCF file
- Parse an annotation line
- Process fasta files
- Adds a DBXref object to the annotation
- Convenience function to export a match
- Parse the TEHMM evidence
- Calculate coverage coverage for a reference sequence
- Parse an ontology graph
- Parses the UniRef100 FASTA file
- Process fastq files
- Add HMM header
- Parse SBP blast evidence
- Parses a GFF3 file into a graph
- Export segments to a file
Get all kandi verified functions for this library.
biocode Key Features
No Key Features are available at this moment for biocode.
biocode Examples and Code Snippets
No Code Snippets are available at this moment for biocode.
Community Discussions
Trending Discussions on biocode
QUESTION
If 'Other ' option is selected in dropbox the textfield should appear and the value of textfield should be sent to DB
Asked 2018-Mar-01 at 10:51
I have a Drop box with one value as 'Other', when I select that option I'm able to get text field, but after submitting the Form, the value of Dropbox in DB is 'Other' where it should be the text inserted by the user in Text field
Below is the HTML CODE :-
...ANSWER
Answered 2018-Mar-01 at 10:51- Change
Branch[]input name to another one (you can simple useOtherBranch[]instead) - Before insert data to db, just check if
$_POST["Branch"][$k] === 'other'then you should take$_POST["OtherBranch"][$k]as branch value.
Updated:
It's better to update your code:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install biocode
You can install using 'pip install biocode' or download it from GitHub, PyPI.
You can use biocode like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
You can use biocode like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
Support
For any new features, suggestions and bugs create an issue on GitHub.
If you have any questions check and ask questions on community page Stack Overflow .
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