klusta | Automatic spike sorting up to 64 channels

by kwikteam Python Version: Current License: BSD-3-Clause

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | klusta Summary

klusta is a Python library. klusta has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

klusta implements the following features:.

Support

Quality

Security

License

Reuse

Support

klusta has a low active ecosystem.

It has 37 star(s) with 34 fork(s). There are 15 watchers for this library.

It had no major release in the last 6 months.

There are 47 open issues and 24 have been closed. On average issues are closed in 55 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of klusta is current.

Quality

klusta has 0 bugs and 0 code smells.

Security

klusta has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

klusta code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

klusta is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

klusta releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed klusta and discovered the below as its top functions. This is intended to give you an instant insight into klusta implemented functionality, and help decide if they suit your requirements.

Run spike detection on the given PRM file
Add spike data
Add spikes after detection
Format the log record
Return the partial shape
Return item as a tuple
Return the current git version
Returns the mapping of cluster groups
Delete the given path
Add default handler
List of cluster ids
Cluster clustering
Concatenate NumPy arrays
Return the path to the relative path for a chunk
Return a list of all subdirectories of the given package root
Describes the file
Return list of hdf5 groups
Set the channel group

Get all kandi verified functions for this library.

klusta Key Features

No Key Features are available at this moment for klusta.

klusta Examples and Code Snippets

No Code Snippets are available at this moment for klusta.

Community Discussions

Trending Discussions on klusta

attributeerror 'module' object has no attribute 'openfile'

QUESTION

attributeerror 'module' object has no attribute 'openfile'

Asked 2017-Aug-14 at 01:16

I'm trying to figure out the error that occurred using Python. I'm trying to use the module detektspikes.py freely distributed by klustakwik team.

I'm having trouble with errors that occurred when run.

Error log:

...

ANSWER

Answered 2017-Aug-14 at 01:16

The problem is that that code is for a very old version of Python and trying to access a no longer existing method of tables. See here: http://www.pytables.org/MIGRATING_TO_3.x.html

If you want to run the script you'd have to run it in an old version of Python like 2.3, or update the lines that use openFile to use open_file instead. Though there may be other incompatibilities that I'm not aware of.

Source https://stackoverflow.com/questions/45666218

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install klusta

The following instructions will install both klusta and the phy KwikGUI.
Make sure that you have miniconda installed. You can choose the Python 3.5 64-bit version for your operating system (Linux, Windows, or OS X).
Download the environment file.
Open a terminal (on Windows, cmd, not Powershell) in the directory where you saved the file and type: conda env create -n klusta -f environment.yml
Done! Now, to use klusta and the phy KwikGUI, enter the directory that contains your files and type: source activate klusta # omit the `source` on Windows klusta yourfile.prm # spikesort your data with a PRM file phy kwik-gui yourfile.kwik # open the GUI See the documentation for more details.