roko | A deep learning consensus polisher

 by   lbcb-sci Python Version: Current License: GPL-3.0

kandi X-RAY | roko Summary

kandi X-RAY | roko Summary

roko is a Python library. roko has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Roko is a consensus polisher which takes draft assembly and aligned reads in BAM format and outputs a set of contigs in FASTA format. It uses deep learning architecture to produce high quality consensus. Features are represented as sampled reads in a window and labels are mapped to draft assembly in Medaka-style fashion.
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            kandi-support Support

              roko has a low active ecosystem.
              It has 4 star(s) with 3 fork(s). There are 4 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              roko has no issues reported. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of roko is current.

            kandi-Quality Quality

              roko has no bugs reported.

            kandi-Security Security

              roko has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              roko is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              roko releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              Installation instructions are not available. Examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed roko and discovered the below as its top functions. This is intended to give you an instant insight into roko implemented functionality, and help decide if they suit your requirements.
            • Generate train labels
            • Filter a list of alignments based on the given alignment
            • Get the positions and labels for a given region
            • Return a list of TargetAlign objects
            • Return pairs of align positions
            • Checks if given position is within a region
            • Return the overlap between two intervals
            • Store the given contig
            • Extend the model
            • Write the file descriptor
            • Clears the model
            • Train the model
            • Inner function for inference
            • Generate a set of overlapping regions
            • Write contigs to file
            Get all kandi verified functions for this library.

            roko Key Features

            No Key Features are available at this moment for roko.

            roko Examples and Code Snippets

            No Code Snippets are available at this moment for roko.

            Community Discussions

            QUESTION

            Why does a simple JS autoclicker break the page?
            Asked 2021-Mar-01 at 18:06

            I am trying to make an autoclicker script that runs while a mouse is held in a left click (e.g. holding down the left click spams clicks), and want it to not just run on a specific element, for example button-2, but wherever the mouse is. I came up with this little script:

            ...

            ANSWER

            Answered 2021-Mar-01 at 18:06
            • Create a Singleton Mouse Object with default browser listeners iterable Methods for
              "mousedown" "mouseup" "mouseover" Events.
            • Afterwards assign to your Singleton additional non-enumerable properties:
              isDown (Boolean) to handle if the mouse is down or up
              autoClick (Function) that will trigger on the "mouseover" event.
            • Assign your enumerable keys ("EventTypes") method in a forEach manner to the Window.document object

            Source https://stackoverflow.com/questions/66413779

            QUESTION

            No virtual method verifyPhoneNumber, FATAL EXCEPTION: main
            Asked 2020-Nov-26 at 01:00

            After updating the libraries into the Gradle file, I run into this error after trying to authenticate through the phone number.

            ...

            ANSWER

            Answered 2020-Nov-04 at 01:46

            I managed to resolve by downgrading firebase auth, and firebase auth-ui to:

            Source https://stackoverflow.com/questions/64672343

            QUESTION

            DIV height problem (wrong height) in JQuery
            Asked 2019-Jul-22 at 09:55

            in some pages, I want to make two Divs the same height by JQuery. one div is sidebar and another is the content part. but there is a problem in my codes, I think. when there are some images in the page, the height will be wrong because of loading slowly and one div will be shorter than another.

            my HTML codes:

            ...

            ANSWER

            Answered 2019-Jul-21 at 17:39

            I guess this is what you need but still I think CSS is a better solution.

            Source https://stackoverflow.com/questions/57135203

            QUESTION

            How do paste to multiple input?
            Asked 2019-Mar-15 at 22:20

            There's a inputs with six entries. If the desired digits is directly pasted into the inputs..

            ...

            ANSWER

            Answered 2019-Mar-15 at 20:11

            You can listen to the paste event and grab the pasted text.

            Then loop over each pasted char and update each input field like this:

            Source https://stackoverflow.com/questions/55189763

            QUESTION

            Two circles as a cursor causing vertical and horizontal scrollbars
            Asked 2018-Dec-29 at 18:50

            I'm developing a website and I wanted to have two circles as a cursor. I've already found an answer (two circles should follow the cursor – one small and one big (with delay)) how to do that but the problem is when I move mouse all the way to the right or down these two circles cause vertical or horizontal scrollbar.

            This code is a copy-paste from the link above so you can try to move mouse to the bottom of the screen and see what I'm talking about.

            ...

            ANSWER

            Answered 2018-Dec-29 at 16:04

            To overcome the problem what you need to do is to subtract some value from left: e.pageX and top: e.pageY Try following modified code, I think this will solve your issue;

            Source https://stackoverflow.com/questions/53970826

            QUESTION

            jQuery- click at a co-ordinate on an image and draw a circle there
            Asked 2018-Jul-29 at 14:53

            I have a div namely image_preview with an image inside it. There is an input box to get the radius of the circle from the user. When I click at a point on the image, I need a circle with that point as the center and the radius input as the radius. The circle should be marked with a marker . The div with id hotspot_display works as the marker and the div circle acts as the circle to be displayed . Both are absolutely positioned. The marker has as its background an image with the dimension 24X24.

            Whenever I click, clones of the marker and circle are made and positioned around the point I clicked. The marker and circle positions are changed with mouse click (You'll find the fiddle link at the end of this question).

            I can capture the co-ordinate of the point at which I click with offset and clientX etc. the code for which follows:

            HTML: Image:

            ...

            ANSWER

            Answered 2018-Jul-29 at 14:53

            Here's a simpler approach:

            • To get the center use something like ev.pageX - el.offset().left
            • Don't clone elements. Create them on the fly.
            • Use CSS transform translate to center them

            Source https://stackoverflow.com/questions/51468968

            QUESTION

            Firefox this page has no sources
            Asked 2018-Jan-12 at 00:57

            I'm working on a JavaScript game and it works as intended in Chrome and Safari. However, in Firefox, the page doesn't load any scripts, and the debugger is empty. I'm not seeing any errors at all. This is the entirety of the html:

            ...

            ANSWER

            Answered 2018-Jan-12 at 00:05

            You're using module features not openly available in Firefox. To enable them you could go to about:config and enable them under dom.moduleScripts.enabled setting it's Value to true

            Meanwhile you could use a polyfill like this or use build tools that will compile your modules into a single ES5-backed production-ready file.

            Some indepth readings:

            https://html.spec.whatwg.org/multipage/webappapis.html#integration-with-the-javascript-module-system
            https://developer.mozilla.org/en-US/docs/Web/HTML/Element/script https://jakearchibald.com/2017/es-modules-in-browsers/
            https://medium.com/webpack/the-state-of-javascript-modules-4636d1774358

            Source https://stackoverflow.com/questions/48217451

            QUESTION

            Error when calling RokoAccount.logout()?
            Asked 2017-Mar-20 at 15:26

            I am integrating ROKO Mobi into my Android app.

            I am trying to call RokoAccount.logout() after I call RokoAccount.setUser() but I see the following error message in my client-side console log when I try to do this.

            E/btLogout: failure string: {"apiStatusCode":"AccessDenied","apiStatusMessage":"User not authorized for this action."}

            Why am I receiving this?

            ...

            ANSWER

            Answered 2017-Mar-20 at 15:26

            It's possible you're seeing this error because RokoAccount.setUser() executes asynchronously.

            The code snippet below calls RokoAccount.logout() in an asynchronous fashion, give it a shot!

            Source https://stackoverflow.com/questions/42907470

            QUESTION

            Function setTimeout passed as argument in js class executes immediately, and call class method inside setTimeout
            Asked 2017-Feb-24 at 16:17

            Js class method getInfo should call alert after 5 seconds delay, but it fires immediately

            ...

            ANSWER

            Answered 2017-Feb-24 at 15:54

            Place the alert event inside a function.

            Source https://stackoverflow.com/questions/42428912

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install roko

            You can download it from GitHub.
            You can use roko like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            CLONE
          • HTTPS

            https://github.com/lbcb-sci/roko.git

          • CLI

            gh repo clone lbcb-sci/roko

          • sshUrl

            git@github.com:lbcb-sci/roko.git

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