PyBox | automatically creates and solves equations | Data Manipulation library

 by   loftytopping Python Version: 1.0.1 License: GPL-3.0

kandi X-RAY | PyBox Summary

kandi X-RAY | PyBox Summary

PyBox is a Python library typically used in Utilities, Data Manipulation, Numpy applications. PyBox has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However PyBox build file is not available. You can download it from GitHub.

PyBox works on the basis of reading a file that defines reactions between compounds in the gas phase and the associated reaction coefficient. For example, take the MCM Alpha-Pinene chemical mechanism file 'MCM_APINENE.eqn.txt' stored in the 'mechanism_files' directory of PyBox. This contains the following snippet of text:. Where the equation number is defined first, then the reactants/products along with a defined rate coefficient. This equation file is parsed by functions in 'Parse_eqn_file.py', providing information that can be used to set up and solve the relevant ordinary differential equations (ODEs) to simulate the evolution of the chemical mechanism. Each component in this chemical mechanism also has an associated record of chemical structure in the form of a SMILES string. This information is carried in a .xml file, provided by the MCM, and stored in the root directory of PyBox. Why is this important? Well, this information is taken by the UManSysProp informatics suite and allows us to predict properties of each compound that helps us predict whether they are likely to remain in the gas phase or condense to an existing particulate phase through gas-to-particle partitioning. Before we take a look at the directory structure provided in this repository, lets deal with the dependencies.
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            kandi-support Support

              PyBox has a low active ecosystem.
              It has 25 star(s) with 7 fork(s). There are 8 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 3 open issues and 7 have been closed. On average issues are closed in 6 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of PyBox is 1.0.1

            kandi-Quality Quality

              PyBox has 0 bugs and 0 code smells.

            kandi-Security Security

              PyBox has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              PyBox code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              PyBox is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              PyBox releases are available to install and integrate.
              PyBox has no build file. You will be need to create the build yourself to build the component from source.
              Installation instructions, examples and code snippets are available.
              PyBox saves you 662008 person hours of effort in developing the same functionality from scratch.
              It has 328000 lines of code, 53 functions and 33 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed PyBox and discovered the below as its top functions. This is intended to give you an instant insight into PyBox implemented functionality, and help decide if they suit your requirements.
            • Calculates the ODE equation
            • Plots the stacked contributions of the simulation
            • Writes the loss gain to a matrix
            • Save a sparse matrix to a file
            • Write the reactants to a Fortran file
            • Extract SMILES and SOILES
            • Lognormal distribution
            • Extracts species information from a file
            • Convert the rate mcm
            • Writes the reactants indices to file
            • Convert the rate matrix to Fortran
            • Writes the rate coefficients to a Fortran file
            • Pure complex component
            • Writes the rate coefficients to a file
            • Writes loss and gain to a Fortran file
            • Writes the partitioninging section of a Fortran file
            • Write the jacobian to a file
            • Extracts the MCMC model
            • Writes the RO2 indices to a file
            • Pureuxiliary function
            Get all kandi verified functions for this library.

            PyBox Key Features

            No Key Features are available at this moment for PyBox.

            PyBox Examples and Code Snippets

            No Code Snippets are available at this moment for PyBox.

            Community Discussions

            QUESTION

            What is the proper syntax to import view in urls.py in django3?
            Asked 2020-Apr-26 at 16:47

            What is the proper syntax to import view.py into urls.py

            I am trying to add pagination and search and have run into a SyntaxError "SyntaxError: invalid syntax" .

            I tried my best to debug it the last few days. I can see it is the way I am importing view. I tried a bunch of combinations and made it worse any guidance extremely appreciated.

            File "C:\Users\taylo\Desktop\pybox\blogdemo\blog\urls.py", line 3

            blogdemo/blog/urls.py

            ...

            ANSWER

            Answered 2020-Apr-26 at 16:47

            QUESTION

            GetGUIThreadInfo() with pywin32
            Asked 2020-Jan-30 at 20:06

            I am trying to follow this answer and i have reached the point where a should call

            ...

            ANSWER

            Answered 2020-Jan-24 at 15:48

            Apparently, [MS.Docs]: GetGUIThreadInfo function is not wrapped by PyWin32, so alternative ways must be used. One of them is calling it via [Python 3.Docs]: ctypes - A foreign function library for Python (involves writing a lot of extra code).

            code00.py:

            Source https://stackoverflow.com/questions/59884688

            QUESTION

            Python C++ api - return different types in function overloading
            Asked 2019-May-18 at 05:53

            I have a C++ class that contains two overloaded methods sayHi(), each with a different return type:

            ...

            ANSWER

            Answered 2019-May-17 at 16:28

            You need to return a Python int. In C/C++ source this is a PyLongObject (Which is a subtype of PyObject, so you can cast a PyLongObject* to a PyObject* and back). To convert a C++ int into a PyObject* Python int, use PyObject* PyLong_FromLong(long):

            Source https://stackoverflow.com/questions/56189869

            QUESTION

            Python C++ API - how to access/set class atributes from Python?
            Asked 2019-May-13 at 16:39

            I have created getsetters for a public variable number_bananas I have in my Box class. number_bananas is public because the box is unlocked, anyone can eat bananas or put more in the box.

            Here is my PyBox type:

            ...

            ANSWER

            Answered 2019-May-13 at 16:39

            self->bx->number_bananas is not a PyObject* so can't be increfed or decrefed. Instead you want to be converting it to/from a PyObject*. In Python3 you do this with various PyLong_* functions.

            Some untested code would be:

            Source https://stackoverflow.com/questions/56081839

            QUESTION

            Python C++ api: How to access public class attribute?
            Asked 2019-May-09 at 19:12

            I have a C++ class Box that I want to wrap up using python C++ api.

            The class is defined as:

            ...

            ANSWER

            Answered 2019-May-09 at 19:12

            The basic issue is that bx is a pointer, so bx->id could literally anywhere in memory relative to PyBox. Therefore offsetof can never work and thus defining the members in PyMemberDef also can never work.

            One solution would be to change the class definition so Box is part of the class (and so an offset is meaningful). This may or may not make sense depending on your C++ code:

            Source https://stackoverflow.com/questions/56062983

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install PyBox

            PyBox has been built in the Anaconda environment. Assimulo is currently the numerical core of PyBox. The Assimulo Ordinary Differential Equation (ODE) solver package allows us to use solvers designed for stiff systems. UManSysProp is used to automate predictions of pure component and mixture properties to allow gas-to-particle partitioning simulations if you need to run the partitioning option.

            Support

            Contributions to PyBox are more than welcome. Box-models of aerosol systems can rely on many different process representations. It is thus difficult to define a 'standard' full complexity model. There are many developments planned for PyBox, which you can follow from a scientific perspective in the project wiki. I am therefore very happy to discuss ideas for improvement and how to add/remove features. There are two key rules to follow:.
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