UManSysProp_public | Source code for predictive techniques

 by   loftytopping Python Version: 1.04 License: GPL-3.0

kandi X-RAY | UManSysProp_public Summary

kandi X-RAY | UManSysProp_public Summary

UManSysProp_public is a Python library. UManSysProp_public has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However UManSysProp_public build file is not available. You can download it from GitHub.

This repository presents the source code for predictive techniques available in the UManSysProp facility. Please note these files alone will not enable you to run your own version of the UManSysProp server as demonstrated by our website. Rather, the files provided here are to enable you to call our functions from your own Python modules. To run your own server, please download the approproate package from and then insert the files and folders provided here within the umansysprop sub-directory. All files presented here are covered under the GNU GPL license v3.0. For more information, please read the license file. A brief overview of the viable permissions can be found here: The UManSysProp facility was created to provide automated predictions of molecular and mixture properties. The website provides details on the provenance of the predictive techniques provided here, as well as providing you with a web based interface for carrying out predictions without handling any code. For more flexibility, we also provide a programmer friendly JSON API that enables you to call our suite of tools from your own code without opening a web browser. More information can be found on our site. To re-iterate, here we provide the source code for those predictive techniques outside of the server framework. Written in Python, the UManSysProp folder can be imported as a module which then gives relevant access to each technique. For example, to calculate the functional groups for use with the AIOMFAC technique, one might write: import umansysprop.groups #umansysprop is constructed as a package import pybel AIOMFAC_keys = {} for s in SMILES: SMILES_object=pybel.readstring(b'smi',s) AIOMFAC_keys[s] = umansysprop.groups.aiomfac(SMILES_object). Note you need to have the Python interface to the openbabel package installed (Pybel). Ultimately, we aim to generate a user community around UManSysProp. As we develop and evaluate more predictive techniques and models, according to the scientific peer review process, these will be included in future releases. If you use any of our developments in your code, following the license restrictions, we would appreciate hearing about it. We also request you reference our development paper: Topping, D., Barley, M., Bane, M. K., Higham, N., Aumont, B., Dingle, N., and McFiggans, G.: UManSysProp v1.0: an online and open-source facility for molecular property prediction and atmospheric aerosol calculations, Geosci. Model Dev., 9, 899-914, doi:10.5194/gmd-9-899-2016, 2016. Code DOI. In addition, if you would like any particular technique added to this facility then get in touch and we can discuss. For up to date information, including paper and training alerts, please check our website:. You can also follow us on twitter @UManSysProp.
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            kandi-support Support

              UManSysProp_public has a low active ecosystem.
              It has 11 star(s) with 8 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 2 open issues and 4 have been closed. On average issues are closed in 25 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of UManSysProp_public is 1.04

            kandi-Quality Quality

              UManSysProp_public has no bugs reported.

            kandi-Security Security

              UManSysProp_public has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              UManSysProp_public is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              UManSysProp_public releases are available to install and integrate.
              UManSysProp_public has no build file. You will be need to create the build yourself to build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed UManSysProp_public and discovered the below as its top functions. This is intended to give you an instant insight into UManSysProp_public implemented functionality, and help decide if they suit your requirements.
            • This function compares an abundance fractional mass
            • Return the amino acids for a molecule
            • Returns the number of matches that match the pattern
            • Given a list of compounds in the AIOMFAC
            • Generate a handler for interacting with the conditions
            • R Calculate the ion masses of a molecule
            • Aggregate the matches
            • Creates a growth factor model from inorganics
            • Render the results in a CSV file
            • Write the contents of a file
            • Handle a tool
            • Make a JSON RPC request
            • Calculates the activity coefficient for each component
            • Perform an RPC call
            • Calculates the activity coefficients for each compound
            • Calculate the activity coefficient for each component
            • Read a matrix from a file
            • Write the contents of the file
            • Calculates the activity coefficients for the given organic compounds
            • Calculate thermal and yaw of a compound
            • Render results as HTML
            • This function calculates the mappings for a molecule
            • Parses a compound
            • This function returns a list of the species_spaces
            • Calculates the MACCS for a compound
            • Render the results of a xlsx file
            • Calculate the reaction coefficient for a set of organic compounds
            Get all kandi verified functions for this library.

            UManSysProp_public Key Features

            No Key Features are available at this moment for UManSysProp_public.

            UManSysProp_public Examples and Code Snippets

            No Code Snippets are available at this moment for UManSysProp_public.

            Community Discussions

            No Community Discussions are available at this moment for UManSysProp_public.Refer to stack overflow page for discussions.

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install UManSysProp_public

            You can download it from GitHub.
            You can use UManSysProp_public like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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