munk | species Network Kernel algorithm to embed proteins | Data Visualization library

by lrgr Python Version: archive/sl_explore License: MIT

X-Ray Key Features Code Snippets(2)Community Discussions(5)Vulnerabilities Install Support

kandi X-RAY | munk Summary

munk is a Python library typically used in Institutions, Learning, Education, Analytics, Data Visualization applications. munk has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However munk build file is not available. You can download it from GitHub.

A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks

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Quality

Security

License

Reuse

Support

munk has a low active ecosystem.

It has 8 star(s) with 3 fork(s). There are 5 watchers for this library.

It had no major release in the last 12 months.

There are 0 open issues and 2 have been closed. On average issues are closed in 144 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of munk is archive/sl_explore

Quality

munk has no bugs reported.

Security

munk has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

munk is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

munk releases are available to install and integrate.

munk has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed munk and discovered the below as its top functions. This is intended to give you an instant insight into munk implemented functionality, and help decide if they suit your requirements.

Load genetic interactions
Load nucleotide interactions table
Get a logger
Compute the 2 - core product of a graph
Compute the embedding of the source graph
R Compute the rkhs factor
Computes the embedding of target_s
Linearized linearization
Train and predict a KFold
Compute the maximum F1 score
Calculate f1
Generates a data generator
Splits a pair of pairs
Returns training and test data
R Regularized lamacian
Convert an index to a node
Convert a node to a dictionary
Generate a plot and save it to disk
Argument parser
Parse command line arguments
Separate two scored scores
R Computes the Hessian of a matrix D

Get all kandi verified functions for this library.

munk Key Features

No Key Features are available at this moment for munk.

munk Examples and Code Snippets

MUlti-species Network Kernel (MUNK),Setup

Python

Lines of Code : 3

License : Permissive (MIT)

Copy

conda env create -f environment.yml
source activate munk

./install_munk.sh

MUlti-species Network Kernel (MUNK),Data

Python

Lines of Code : 1

License : Permissive (MIT)

Copy

snakemake -s data/Snakefile -d data --configfile data/data.yml

Community Discussions

Trending Discussions on munk

How to fake Popen in test?

Looking to add comma delimited values in a text file to members of a struct

Make a function that overwrites one string with two strings in the beginning and end

How do I combine values from two adjacent rows in Power Query?

sorting a specific group of items in a nested list

QUESTION

How to fake Popen in test?

Asked 2019-May-08 at 18:22

I've successfully Faked other module with my own Fake implementation or using monkeypatch. But in this case using both fake implementation or monkeypatch failed for subprocess.Popen:

Using monkeypatch, failed. The result still the real opened windows title, not "foo".

...

ANSWER

Answered 2019-May-08 at 18:22

You're patching subprocess.Popen, but in your function under test you're using Popen directly. You're changing the wrong symbol table.

If your function is in foo.py, you want to patch foo.Popen or change your function to use subprocess.Popen.

Source https://stackoverflow.com/questions/56043143

QUESTION

Looking to add comma delimited values in a text file to members of a struct

Asked 2019-Apr-02 at 11:45

I have a text file here with two values, a name and a score. I have a student struct that has 4 members which are seen below.

I am looking to add the values in the text file to the corresponding members in the struct separating by comma.

First five rows of the students.txt file;

...

ANSWER

Answered 2019-Apr-02 at 10:58

You can use std::stringstream to first save each row and than use the same strategy

getline(inFile, student.studentFName, ',' )

except now on the stringstream to fill the 3 variables. Now, that the Student is filled, you can push_back it into your vector and afterwards call your printStudents function.

I removed the using namespace std; as it is bad practise (you can read here why). You also didn't provide a grade in your text file, so I removed that part when printing the students.

Source https://stackoverflow.com/questions/55472561

QUESTION

Make a function that overwrites one string with two strings in the beginning and end

Asked 2017-Sep-27 at 13:59

I'm using the strange language of Racket to overwrite one string with two others at the beginning and end.

...

ANSWER

Answered 2017-Sep-27 at 02:26

Apparently figured out it was a one-line answer. Bullcrap!

(define (overwrite s beg end) (string-append beg (substring s (string-length beg) (- (string-length s) (string-length end))) end))

I mean if anyone's got a better way of doing this, feel free to share.

Source https://stackoverflow.com/questions/46438155

QUESTION

How do I combine values from two adjacent rows in Power Query?

Asked 2017-May-14 at 14:41

I have an address list in this format:

...

ANSWER

Answered 2017-May-14 at 14:41

Create a table with second addresses: sort AddressList on AdressType (ascending, so Delivery will come first), buffer and remove duplicates.

The rest of the code should be obvious:

Query "SecondAdresses":

Source https://stackoverflow.com/questions/43954662

QUESTION

sorting a specific group of items in a nested list

Asked 2017-Apr-24 at 14:17

students = [["White", "Snow", 9, "F", 3.56],
            ["Sprat", "Jack", 12, "M", 2.0],
            ["Contrary", "Mary", 9, "F", 3.674],
            ["Dumpty", "Humpty", 11, "M", 2.342],
            ["Bunny", "Easter", 10, "M", 4.233],
            ["Wonderland", "Alice", 10, "F", 3.755],
            ["Bunyon", "Paul", 11, "M", 1.434],
            ["Penny", "Henny", 9, "F", 2.54],
            ["Hatter", "Mad", 11, "M", 4.522],
            ["Munk", "Chip", 10, "M", 3.0],
            ["Hood", "Red Riding", 10, "F", 3.137],
            ["Bunny", "Bugs", 11, "M", 2.12],
            ["Duck", "Daffy", 11, "M", 3.564],
            ["Ant", "Atom", 12, "M", 3.333],
            ["Mouse", "Mickey", 10, "M", 3.975],
            ["Brown", "Charlie", 9, "M", 1.25]]

...

ANSWER

Answered 2017-Apr-24 at 14:08

Is this what you are after:

Source https://stackoverflow.com/questions/43590247

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install munk

We recommend users to install MUNK, along with other dependencies, into a Python environment using Conda. To install Python and other dependencies, which you can do directly using the provided environment.yml file:. This munk Conda environment can be used to run any number of experiments and examples included in this project/repository. We note that experiments and data download for other parts of this project are implemented and configured with Snakemake which will be installed as part of the munk environment.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: