c2s | A toolbox for inferring spikes from calcium traces

 by   lucastheis Python Version: Current License: MIT

kandi X-RAY | c2s Summary

kandi X-RAY | c2s Summary

c2s is a Python library. c2s has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Tools for the prediction of spike trains from calcium traces.
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            kandi-support Support

              c2s has a low active ecosystem.
              It has 22 star(s) with 11 fork(s). There are 8 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 3 open issues and 7 have been closed. On average issues are closed in 3 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of c2s is current.

            kandi-Quality Quality

              c2s has 0 bugs and 0 code smells.

            kandi-Security Security

              c2s has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              c2s code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              c2s is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              c2s releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.
              c2s saves you 2209 person hours of effort in developing the same functionality from scratch.
              It has 4835 lines of code, 40 functions and 27 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed c2s and discovered the below as its top functions. This is intended to give you an instant insight into c2s implemented functionality, and help decide if they suit your requirements.
            • R Compute correlation coefficients
            • Optimizes predictions based on spike rate
            • Downsamples a signal
            • Preprocess the data
            • Robustly robust linear regression
            • Wrapper function for percentile_filter
            • Load data from file
            • Loads the results from file
            • Load a file
            • Save experiment to file
            • Set experiment status
            • Train the model
            • Predict from data
            • Convert input to unicode
            • Set progress
            Get all kandi verified functions for this library.

            c2s Key Features

            No Key Features are available at this moment for c2s.

            c2s Examples and Code Snippets

            No Code Snippets are available at this moment for c2s.

            Community Discussions

            QUESTION

            curl: (52) Empty reply from server while calling ejabbered API Commands
            Asked 2022-Feb-14 at 20:19

            My ejabberd server is running in a docker container and I am trying to call ejabberd API commands. Somehow I am always getting "curl: (52) Empty reply from server". I don't know where I am wrong in configuring yml file for ejabbered. I tried getting the list of vhosts and registered_users. But all I am getting is Empty reply.

            Below is my YML file

            ...

            ANSWER

            Answered 2022-Feb-14 at 20:19

            Assuming a configuration that includes at least those parts:

            Source https://stackoverflow.com/questions/71089099

            QUESTION

            How to configure multi-user chat (mod_muc) for Ejabberd?
            Asked 2022-Feb-11 at 12:45

            I've found this: https://docs.ejabberd.im/admin/configuration/modules/#mod-muc

            And this: https://docs.ejabberd.im/admin/ejabberdctl/muc-admin/#prerequisite

            What are the steps I need to do to setup MUC from a fresh install? mod_muc is already in the ejabberd.yml file, and so is mod_muc_admin. I've also added myself as an admin.

            Here is my ejabberd.yml file:

            ...

            ANSWER

            Answered 2022-Feb-11 at 12:45

            What are the steps I need to do to setup MUC from a fresh install?

            Usually mod_muc is already configured and enabled by default. Of course, if ejabberd is installed in a remote server, you will need to setup DNS for the MUC service, similar to what you may want to do for any other services that have their specific domain, like pubsub.example.org

            Source https://stackoverflow.com/questions/71041069

            QUESTION

            Configuration related issue while implementing pyejabberd message system
            Asked 2021-Dec-22 at 10:15

            I am implementing a message system in my python app and to achieve this I am using the client library of ejabberd which is pyejabberd. I have checked the official documentation of this to configure the ejabberd.yml file but getting some errors. which is BadStatusLine("") error. IDK why this is getting my ejabberd.yml file's content/configuration is -

            ...

            ANSWER

            Answered 2021-Dec-22 at 10:15

            Disclaimer: I never used pyejabberd, so I'll just give you some ideas to investigate.

            I see your client attempts to connect to port 5443 with HTTP protocol. Looking at your ejabberd configuration, that has TLS enabled... so maybe it should be HTTPS? Or you can try to set "tls: false" in ejabberd.

            Also, what kind of connection method does pyejabberd use to connect to ejabberd? XMPP (port 5222), or XMPP over BOSH (port 5443), or XMPP over WebSocket (port 5443, but a different URL path).

            Maybe you should set in pyejabberd port 5222 and protocol xmpp, or something like that.

            Check in ejabberd log files, if it receives the connection attempt. Try to login with a well-known XMPP client, so you learn how that looks in ejabberd log files (what messages it shows when login is successful), and compare that with your client.

            Source https://stackoverflow.com/questions/70421948

            QUESTION

            Set allowed transport and MAC ciphers for SSHClient
            Asked 2021-Dec-07 at 13:07

            I'm trying to modify an SSH client using SSHJ so that it only allows certain ciphers. I have properties in a properties file something like this:

            ...

            ANSWER

            Answered 2021-Dec-07 at 13:07

            For future reference/anyone else who wants a quick solution, here's a derived class from DefaultConfig, as suggested by @Robert.

            Source https://stackoverflow.com/questions/69496605

            QUESTION

            XMPP, Ejebberd auth-mechanism
            Asked 2021-Aug-16 at 15:32

            I would like to ask if there is a possibility to force the authentification mechanisms in the ejabberd config. Currently the ejabberd server is providing a list of the available, authentification mechanisms.

            In the ejabberd log we can see the list:

            ...

            ANSWER

            Answered 2021-Aug-16 at 15:32

            You can disable SASL mechanisms using https://docs.ejabberd.im/admin/configuration/toplevel/#disable-sasl-mechanisms

            For the other methods, looking at the source code they are automatically enabled/disabled: https://github.com/processone/ejabberd/blob/8afc320aba7bdb51f7a76973be2d9cbf200c6310/src/ejabberd_c2s.erl#L376

            Of course, you can simply delete there the lines you don't want at all, recompile and install.

            Source https://stackoverflow.com/questions/68802025

            QUESTION

            ejabberd connecting to admin "missing server"
            Asked 2021-Jul-27 at 11:41

            I'm trying to configure an ejabberd service that is working behind a public facing server. The latter sends https requests to the former via nginx reverse-proxy.

            When accessing https://xmpp.example.cyou:5443/admin/ I place the credentials for user admin, but cannot log in. The log shows:

            ...

            ANSWER

            Answered 2021-Jul-27 at 11:41

            I place the credentials for user admin, but cannot log in.

            Access of <<"admin">> from <<"44.44.55.55">> failed with error: <<"missing-server">>

            You provided as account only "admin", and that is wrong.

            As mentioned in https://docs.ejabberd.im/admin/guide/managing/#web-admin

            Source https://stackoverflow.com/questions/68543889

            QUESTION

            What is/does `bool c2s(int)` in Hoard?
            Asked 2021-Jul-13 at 17:45

            In the source of geometricsizeclass.cpp of Hoard (the memory allocator) there a not defined function bool c2s(int).

            What is it, what does it do ?

            I'm trying to compile hoard as a library in VS2019, ignoring the Makefile.

            ...

            ANSWER

            Answered 2021-Jul-13 at 16:03

            QUESTION

            lmfit model for multi exponential decay
            Asked 2021-Apr-05 at 08:54

            I am trying to perform a fitting for my data using the lmfit package. However I couldnt find any built-in model for a multi-exponential decay. I have tried to create my own function, and then to fit it. My code is the following:

            ...

            ANSWER

            Answered 2021-Mar-24 at 11:13

            Am I wrong or are you making your life too complicated. While not using lmfit myself, I think it is designed such that you do not have to do all the programming you have done here. I think it should just look like:

            Source https://stackoverflow.com/questions/66776253

            QUESTION

            Call function on one of many vectors without enum and switch
            Asked 2020-Sep-14 at 20:19

            I have a class that contains several vectors of unrelated classes.

            ...

            ANSWER

            Answered 2020-Sep-14 at 14:54

            You should keep the code as much as simple as possible. As per the currently shown code, it is simple and readable for every developer who works later on the codebase.

            Secondly, the internal storage via std::vectors will make this task anyways at run-time. Because, most of the operations happen with the std::vector is run time overhead as they allocate the memory and manage it at run time. Therefore you can not do any compile-time work for std::vector::erase and whatsoever.

            That being said, if you insist to avoid the switch statement, and bring the template complication, one is below, which still would have kind of template type mapping using if constexpr, and the vector erase happens at run-time.

            Source https://stackoverflow.com/questions/63879792

            QUESTION

            JWT auth in ejabberd
            Asked 2020-Sep-07 at 15:21

            I have configured ejabberd service to use jwt token for authenticating users by following this doc ejabberd authentication. In ejabberd.yml file, I have configured auth mechanism as below

            ...

            ANSWER

            Answered 2020-Sep-07 at 15:21

            For anyone who is stuck in this, I was able to authenticate using jwt token with the below config

            Signed the JWT using "k", placed key set `

            Source https://stackoverflow.com/questions/63778073

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install c2s

            First install the Conditional Modeling Toolkit. Then run:. You can avoid manually installing c2s and its requirements by using Docker. A Dockerfile for c2s is provided by Jonas Rauber. This might make your life easier especially if you are planning to use Windows or Mac OS.

            Support

            If you are a neuroscientist and want to reconstruct spikes from fluorescence/calcium traces or similar signals, please see the main documentation. If you are a developer and want to use c2s in your own Python code, please see the API documentation.
            Find more information at:

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            https://github.com/lucastheis/c2s.git

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            gh repo clone lucastheis/c2s

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            git@github.com:lucastheis/c2s.git

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