Boosted-OICR | Distilling Knowledge from Refinement in Multiple Instance | Machine Learning library

 by   luiszeni Python Version: Current License: MIT

kandi X-RAY | Boosted-OICR Summary

kandi X-RAY | Boosted-OICR Summary

Boosted-OICR is a Python library typically used in Artificial Intelligence, Machine Learning, Pytorch applications. Boosted-OICR has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. However Boosted-OICR build file is not available. You can download it from GitHub.

In this work, we claim that carefully selecting the aggregation criteria can considerably improve the accuracy of the learned detector. We start by proposing an additional refinement step to an existing approach (OICR), which we call refinement knowledge distillation. Then, we present an adaptive supervision aggregation function that dynamically changes the aggregation criteria for selecting boxes related to one of the ground-truth classes, background, or even ignored during the generation of each refinement module supervision. We call these improvements "Boosted-OICR".
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            kandi-support Support

              Boosted-OICR has a low active ecosystem.
              It has 24 star(s) with 2 fork(s). There are 3 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 3 open issues and 15 have been closed. On average issues are closed in 14 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of Boosted-OICR is current.

            kandi-Quality Quality

              Boosted-OICR has 0 bugs and 0 code smells.

            kandi-Security Security

              Boosted-OICR has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              Boosted-OICR code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              Boosted-OICR is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              Boosted-OICR releases are not available. You will need to build from source code and install.
              Boosted-OICR has no build file. You will be need to create the build yourself to build the component from source.
              Installation instructions, examples and code snippets are available.
              Boosted-OICR saves you 1728 person hours of effort in developing the same functionality from scratch.
              It has 3827 lines of code, 239 functions and 49 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed Boosted-OICR and discovered the below as its top functions. This is intended to give you an instant insight into Boosted-OICR implemented functionality, and help decide if they suit your requirements.
            • Load ground - truth data
            • Add GT annotations to the image
            • Add proposals from a proposal file
            • Merge proposal boxes into a ROIDB
            • Calculate the total time
            • Calculate the visualization of the box
            • Compute the mean loss of a classifier
            • Gets the adaptive lambda function for the given inner iteration
            • Create a combined ROIDB
            • Load ground - truth image annotations
            • Check that the expected results match the expected function
            • Sends an email
            • Convert coco_eval results to a dictionary
            • Add proposal boxes into ROI
            • Calculate image sizes
            • Calculate the elapsed time
            • Load detectron weight
            • Return information about the VOC
            • Assert that the weight file is empty
            • Parse command line arguments
            • Load pretrained image weights
            • Cache a URL using detectron
            • Decrement learning rate
            • Save the CKPT model
            • Merge configuration values from a list
            • Updates the iteration statistics
            • Update learning rate based on current learning rate
            • Get a blob from an image
            Get all kandi verified functions for this library.

            Boosted-OICR Key Features

            No Key Features are available at this moment for Boosted-OICR.

            Boosted-OICR Examples and Code Snippets

            No Code Snippets are available at this moment for Boosted-OICR.

            Community Discussions

            QUESTION

            Using RNN Trained Model without pytorch installed
            Asked 2022-Feb-28 at 20:17

            I have trained an RNN model with pytorch. I need to use the model for prediction in an environment where I'm unable to install pytorch because of some strange dependency issue with glibc. However, I can install numpy and scipy and other libraries. So, I want to use the trained model, with the network definition, without pytorch.

            I have the weights of the model as I save the model with its state dict and weights in the standard way, but I can also save it using just json/pickle files or similar.

            I also have the network definition, which depends on pytorch in a number of ways. This is my RNN network definition.

            ...

            ANSWER

            Answered 2022-Feb-17 at 10:47

            You should try to export the model using torch.onnx. The page gives you an example that you can start with.

            An alternative is to use TorchScript, but that requires torch libraries.

            Both of these can be run without python. You can load torchscript in a C++ application https://pytorch.org/tutorials/advanced/cpp_export.html

            ONNX is much more portable and you can use in languages such as C#, Java, or Javascript https://onnxruntime.ai/ (even on the browser)

            A running example

            Just modifying a little your example to go over the errors I found

            Notice that via tracing any if/elif/else, for, while will be unrolled

            Source https://stackoverflow.com/questions/71146140

            QUESTION

            Flux.jl : Customizing optimizer
            Asked 2022-Jan-25 at 07:58

            I'm trying to implement a gradient-free optimizer function to train convolutional neural networks with Julia using Flux.jl. The reference paper is this: https://arxiv.org/abs/2005.05955. This paper proposes RSO, a gradient-free optimization algorithm updates single weight at a time on a sampling bases. The pseudocode of this algorithm is depicted in the picture below.

            optimizer_pseudocode

            I'm using MNIST dataset.

            ...

            ANSWER

            Answered 2022-Jan-14 at 23:47

            Based on the paper you shared, it looks like you need to change the weight arrays per each output neuron per each layer. Unfortunately, this means that the implementation of your optimization routine is going to depend on the layer type, since an "output neuron" for a convolution layer is quite different than a fully-connected layer. In other words, just looping over Flux.params(model) is not going to be sufficient, since this is just a set of all the weight arrays in the model and each weight array is treated differently depending on which layer it comes from.

            Fortunately, Julia's multiple dispatch does make this easier to write if you use separate functions instead of a giant loop. I'll summarize the algorithm using the pseudo-code below:

            Source https://stackoverflow.com/questions/70641453

            QUESTION

            How can I check a confusion_matrix after fine-tuning with custom datasets?
            Asked 2021-Nov-24 at 13:26

            This question is the same with How can I check a confusion_matrix after fine-tuning with custom datasets?, on Data Science Stack Exchange.

            Background

            I would like to check a confusion_matrix, including precision, recall, and f1-score like below after fine-tuning with custom datasets.

            Fine tuning process and the task are Sequence Classification with IMDb Reviews on the Fine-tuning with custom datasets tutorial on Hugging face.

            After finishing the fine-tune with Trainer, how can I check a confusion_matrix in this case?

            An image of confusion_matrix, including precision, recall, and f1-score original site: just for example output image

            ...

            ANSWER

            Answered 2021-Nov-24 at 13:26

            What you could do in this situation is to iterate on the validation set(or on the test set for that matter) and manually create a list of y_true and y_pred.

            Source https://stackoverflow.com/questions/68691450

            QUESTION

            CUDA OOM - But the numbers don't add upp?
            Asked 2021-Nov-23 at 06:13

            I am trying to train a model using PyTorch. When beginning model training I get the following error message:

            RuntimeError: CUDA out of memory. Tried to allocate 5.37 GiB (GPU 0; 7.79 GiB total capacity; 742.54 MiB already allocated; 5.13 GiB free; 792.00 MiB reserved in total by PyTorch)

            I am wondering why this error is occurring. From the way I see it, I have 7.79 GiB total capacity. The numbers it is stating (742 MiB + 5.13 GiB + 792 MiB) do not add up to be greater than 7.79 GiB. When I check nvidia-smi I see these processes running

            ...

            ANSWER

            Answered 2021-Nov-23 at 06:13

            This is more of a comment, but worth pointing out.

            The reason in general is indeed what talonmies commented, but you are summing up the numbers incorrectly. Let's see what happens when tensors are moved to GPU (I tried this on my PC with RTX2060 with 5.8G usable GPU memory in total):

            Let's run the following python commands interactively:

            Source https://stackoverflow.com/questions/70074789

            QUESTION

            How to compare baseline and GridSearchCV results fair?
            Asked 2021-Nov-04 at 21:17

            I am a bit confusing with comparing best GridSearchCV model and baseline.
            For example, we have classification problem.
            As a baseline, we'll fit a model with default settings (let it be logistic regression):

            ...

            ANSWER

            Answered 2021-Nov-04 at 21:17

            No, they aren't comparable.

            Your baseline model used X_train to fit the model. Then you're using the fitted model to score the X_train sample. This is like cheating because the model is going to already perform the best since you're evaluating it based on data that it has already seen.

            The grid searched model is at a disadvantage because:

            1. It's working with less data since you have split the X_train sample.
            2. Compound that with the fact that it's getting trained with even less data due to the 5 folds (it's training with only 4/5 of X_val per fold).

            So your score for the grid search is going to be worse than your baseline.

            Now you might ask, "so what's the point of best_model.best_score_? Well, that score is used to compare all the models used when searching for the optimal hyperparameters in your search space, but in no way should be used to compare against a model that was trained outside of the grid search context.

            So how should one go about conducting a fair comparison?

            1. Split your training data for both models.

            Source https://stackoverflow.com/questions/69844028

            QUESTION

            Getting Error 524 while running jupyter lab in google cloud platform
            Asked 2021-Oct-15 at 02:14

            I am not able to access jupyter lab created on google cloud

            I created one notebook using Google AI platform. I was able to start it and work but suddenly it stopped and I am not able to start it now. I tried building and restarting the jupyterlab, but of no use. I have checked my disk usages as well, which is only 12%.

            I tried the diagnostic tool, which gave the following result:

            but didn't fix it.

            Thanks in advance.

            ...

            ANSWER

            Answered 2021-Aug-20 at 14:00

            QUESTION

            TypeError: brain.NeuralNetwork is not a constructor
            Asked 2021-Sep-29 at 22:47

            I am new to Machine Learning.

            Having followed the steps in this simple Maching Learning using the Brain.js library, it beats my understanding why I keep getting the error message below:

            I have double-checked my code multiple times. This is particularly frustrating as this is the very first exercise!

            Kindly point out what I am missing here!

            Find below my code:

            ...

            ANSWER

            Answered 2021-Sep-29 at 22:47

            Turns out its just documented incorrectly.

            In reality the export from brain.js is this:

            Source https://stackoverflow.com/questions/69348213

            QUESTION

            Ordinal Encoding or One-Hot-Encoding
            Asked 2021-Sep-04 at 06:43

            IF we are not sure about the nature of categorical features like whether they are nominal or ordinal, which encoding should we use? Ordinal-Encoding or One-Hot-Encoding? Is there a clearly defined rule on this topic?

            I see a lot of people using Ordinal-Encoding on Categorical Data that doesn't have a Direction. Suppose a frequency table:

            ...

            ANSWER

            Answered 2021-Sep-04 at 06:43

            You're right. Just one thing to consider for choosing OrdinalEncoder or OneHotEncoder is that does the order of data matter?

            Most ML algorithms will assume that two nearby values are more similar than two distant values. This may be fine in some cases e.g., for ordered categories such as:

            • quality = ["bad", "average", "good", "excellent"] or
            • shirt_size = ["large", "medium", "small"]

            but it is obviously not the case for the:

            • color = ["white","orange","black","green"]

            column (except for the cases you need to consider a spectrum, say from white to black. Note that in this case, white category should be encoded as 0 and black should be encoded as the highest number in your categories), or if you have some cases for example, say, categories 0 and 4 may be more similar than categories 0 and 1. To fix this issue, a common solution is to create one binary attribute per category (One-Hot encoding)

            Source https://stackoverflow.com/questions/69052776

            QUESTION

            How to increase dimension-vector size of BERT sentence-transformers embedding
            Asked 2021-Aug-15 at 13:35

            I am using sentence-transformers for semantic search but sometimes it does not understand the contextual meaning and returns wrong result eg. BERT problem with context/semantic search in italian language

            by default the vector side of embedding of the sentence is 78 columns, so how do I increase that dimension so that it can understand the contextual meaning in deep.

            code:

            ...

            ANSWER

            Answered 2021-Aug-10 at 07:39

            Increasing the dimension of a trained model is not possible (without many difficulties and re-training the model). The model you are using was pre-trained with dimension 768, i.e., all weight matrices of the model have a corresponding number of trained parameters. Increasing the dimensionality would mean adding parameters which however need to be learned.

            Also, the dimension of the model does not reflect the amount of semantic or context information in the sentence representation. The choice of the model dimension reflects more a trade-off between model capacity, the amount of training data, and reasonable inference speed.

            If the model that you are using does not provide representation that is semantically rich enough, you might want to search for better models, such as RoBERTa or T5.

            Source https://stackoverflow.com/questions/68686272

            QUESTION

            How to identify what features affect predictions result?
            Asked 2021-Aug-11 at 15:55

            I have a table with features that were used to build some model to predict whether user will buy a new insurance or not. In the same table I have probability of belonging to the class 1 (will buy) and class 0 (will not buy) predicted by this model. I don't know what kind of algorithm was used to build this model. I only have its predicted probabilities.

            Question: how to identify what features affect these prediction results? Do I need to build correlation matrix or conduct any tests?

            Table example:

            ...

            ANSWER

            Answered 2021-Aug-11 at 15:55

            You could build a model like this.

            x = features you have. y = true_lable

            from that you can extract features importance. also, if you want to go the extra mile,you can do Bootstrapping, so that the features importance would be more stable (statistical).

            Source https://stackoverflow.com/questions/68744565

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install Boosted-OICR

            [Optional] Build the docker-machine and start it. You should have the Nvidia-docker installed in your host machine. 2.1. Enter in the docker folder inside the repo. 2.2. Build the docker image. 2.3. Return to the root of the repo ($BOOSTED_OICR_ROOT). 2.4 Create a container using the image. I prefer to mount an external volume with the code in a folder in the host machine. It makes it easier to edit the code using a GUI-text-editor or ide. This command will drop you in the container shell. 2.5 If, in any moment of the future, you exit the container, you can enter the container again using this command. Observation: I will not talk about how to display windows using X11 forwarding from the container to the host X. You will need this if you are interested to use the visualization scripts. There are a lot of tutorials on the internet teching X11 Foward in Docker.
            Clone this repository git clone https://github.com/luiszeni/Boosted-OICR && cd Boosted-OICR
            [Optional] Build the docker-machine and start it. You should have the Nvidia-docker installed in your host machine 2.1. Enter in the docker folder inside the repo cd docker 2.2. Build the docker image docker build . -t boicr 2.3. Return to the root of the repo ($BOOSTED_OICR_ROOT) cd .. 2.4 Create a container using the image. I prefer to mount an external volume with the code in a folder in the host machine. It makes it easier to edit the code using a GUI-text-editor or ide. This command will drop you in the container shell. docker run --gpus all -v $(pwd):/root/Boosted-OICR --shm-size 12G -ti \ --name boicr boicr 2.5 If, in any moment of the future, you exit the container, you can enter the container again using this command. docker start -ai boicr Observation: I will not talk about how to display windows using X11 forwarding from the container to the host X. You will need this if you are interested to use the visualization scripts. There are a lot of tutorials on the internet teching X11 Foward in Docker.
            Create a "data" folder in $BOOSTED_OICR_ROOT and enter in this folder. Download the training, validation, test data, and VOCdevkit.
            Create a "data" folder in $BOOSTED_OICR_ROOT and enter in this folder mkdir data cd data
            Download the training, validation, test data, and VOCdevkit wget http://host.robots.ox.ac.uk/pascal/VOC/voc2007/VOCtrainval_06-Nov-2007.tar wget http://host.robots.ox.ac.uk/pascal/VOC/voc2007/VOCtest_06-Nov-2007.tar Optional, normally faster to download, links to VOC (from darknet): wget https://pjreddie.com/media/files/VOCtrainval_06-Nov-2007.tar wget https://pjreddie.com/media/files/VOCtest_06-Nov-2007.tar
            Extract all of these tars into one directory named VOCdevkit tar xvf VOCtrainval_06-Nov-2007.tar tar xvf VOCtest_06-Nov-2007.tar
            Download the VOCdevkit evaluation code adapted to octave wget http://inf.ufrgs.br/~lfazeni/CVPR_deepvision2020/VOCeval_octave.tar
            Extract VOCeval_octave tar xvf VOCeval_octave.tar
            Download pascal annotations in the COCO format wget http://inf.ufrgs.br/~lfazeni/CVPR_deepvision2020/coco_annotations_VOC.tar
            Extract the annotations tar xvf coco_annotations_VOC.tar
            It should have this basic structure $VOC2007/ $VOC2007/annotations $VOC2007/JPEGImages $VOC2007/VOCdevkit # ... and several other directories ...
            [Optional] download and extract PASCAL VOC 2012. wget http://host.robots.ox.ac.uk/pascal/VOC/voc2012/VOCtrainval_11-May-2012.tar tar xvf VOCtrainval_11-May-2012.tar or wget https://pjreddie.com/media/files/VOCtrainval_11-May-2012.tar tar xvf VOCtrainval_11-May-2012.tar Observation: The '2012 test set' is only available in the PASCAL VOC Evaluation Server to download. You must create a user and download it by yourself. After downloading, you can extract it in the data folder.
            Download the proposals data generated by selective search wget http://inf.ufrgs.br/~lfazeni/CVPR_deepvision2020/selective_search_data.tar
            Extract the proposals tar xvf selective_search_data.tar
            Download the pre-trained VGG16 model wget http://inf.ufrgs.br/~lfazeni/CVPR_deepvision2020/pretrained_model.tar
            Extract the pre-trained VGG16 model tar xvf pretrained_model.tar
            [optional] Delete the downloaded files to free space rm *.tar
            Return to the root folder $BOOSTED_OICR_ROOT cd ..

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