brendapy | BRENDA parser in python

 by   matthiaskoenig Python Version: 0.5.0 License: No License

kandi X-RAY | brendapy Summary

kandi X-RAY | brendapy Summary

brendapy is a Python library. brendapy has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can install using 'pip install brendapy' or download it from GitHub, PyPI.

The brendapy package provides a python parser and utility functions for enzyme information from BRENDA. The parser extracts the all information split up by individual protein entries from the database flat file and makes it accessible in a simple manner. This package was developed in the context of building kinetic pathway models with focus on extracting parameters like Km or Ki from BRENDA. brendapy support has been tested on py36 and py37. Citation If you use brendapy in your project cite. BRENDA in 2019: a European ELIXIR core data resource Jeske L., Placzek S., Schomburg I., Chang A., Schomburg D., Nucleic Acids Res., in print (2019). Funding Matthias König is supported by the Federal Ministry of Education and Research (BMBF, Germany) within the research network Systems Medicine of the Liver (LiSyM, grant number 031L0054).
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            kandi-support Support

              brendapy has a low active ecosystem.
              It has 10 star(s) with 1 fork(s). There are 4 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 7 open issues and 21 have been closed. On average issues are closed in 8 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of brendapy is 0.5.0

            kandi-Quality Quality

              brendapy has 0 bugs and 0 code smells.

            kandi-Security Security

              brendapy has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              brendapy code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              brendapy does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              brendapy releases are available to install and integrate.
              Deployable package is available in PyPI.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.
              It has 1003 lines of code, 108 functions and 17 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed brendapy and discovered the below as its top functions. This is intended to give you an instant insight into brendapy implemented functionality, and help decide if they suit your requirements.
            • Find proteins by taxonomy
            • Store a reference
            • Parse an info dictionary
            • Return a dictionary mapping proteins to proteins
            • Parse an ontology map file
            • Serialize dict to json_path
            • Parse entry strings from BRENDA file
            • Get EC number from line
            • Print human - readable human - readable proteins
            • Return all peptides for all ELENECs
            • Return OrderedDict of all the EC2 info dictionaries
            • Parse taxonomy data
            • Print human - readable proteins
            • Download a file from BRENDS
            • Get a logger
            • Return a dictionary of peptide proteins present in the BRENDS
            Get all kandi verified functions for this library.

            brendapy Key Features

            No Key Features are available at this moment for brendapy.

            brendapy Examples and Code Snippets

            No Code Snippets are available at this moment for brendapy.

            Community Discussions

            No Community Discussions are available at this moment for brendapy.Refer to stack overflow page for discussions.

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install brendapy

            brendapy is available from pypi.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            Install
          • PyPI

            pip install brendapy

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            https://github.com/matthiaskoenig/brendapy.git

          • CLI

            gh repo clone matthiaskoenig/brendapy

          • sshUrl

            git@github.com:matthiaskoenig/brendapy.git

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