Detect-seq | unbiased method for genome-wide CBE

by menghaowei Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | Detect-seq Summary

Detect-seq is a Python library. Detect-seq has no bugs, it has no vulnerabilities and it has low support. However Detect-seq build file is not available. You can download it from GitHub.

Detect-seq is a method performs the genome-wide identification of CBE-induced off-targets in the cellular context. This technique is developed by YiLab @ School of Life Sciences, Peking University, Beijing, China. For full informations please click www.detect-seq.com.

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Support

Detect-seq has a low active ecosystem.

It has 5 star(s) with 0 fork(s). There are 2 watchers for this library.

It had no major release in the last 6 months.

Detect-seq has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of Detect-seq is current.

Quality

Detect-seq has 0 bugs and 0 code smells.

Security

Detect-seq has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

Detect-seq code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

Detect-seq does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

Detect-seq releases are not available. You will need to build from source code and install.

Detect-seq has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

It has 2757 lines of code, 34 functions and 10 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed Detect-seq and discovered the below as its top functions. This is intended to give you an instant insight into Detect-seq implemented functionality, and help decide if they suit your requirements.

Add block information to MPM file
Given a bmat file and a genome index return a dictionary mapping site index to the site index
Compare two sites
Test the site binomial test
Make a temporary FASTA file
Count the number of mutations in a site
Find the highest mutation site in the input file
Wrapper for run_extend
Perform a weight alignment analysis analysis
Return the distance between two channels
Calculate genome effective length
Calculate the start and end coordinates for the alignment
Compute the distance for a given distribution
Convert mpmat - to - Art py
Creates a report of the TALE alignment results
Generate a list of regions for a region
Check if file exists
Merge split files into separate files
Calculate alignments for a given alignment
Helper function to create base_all_normalization_dict
Convert a BAM file into count info
Split MPT file by chr name
Perform a step alignment
Calculate weight of align_align_res
Performs multi - threaded multi - threaded counting
Count number of mutations in a BAM file

Get all kandi verified functions for this library.

Detect-seq Key Features

No Key Features are available at this moment for Detect-seq.

Detect-seq Examples and Code Snippets

No Code Snippets are available at this moment for Detect-seq.

Community Discussions

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Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Detect-seq

All Python code in this repertory can be directly downloaded and used like:.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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