Medusa | Analysis of ensembles of metabolic network reconstructions

by opencobra Python Version: v0.2.1 License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | Medusa Summary

Medusa is a Python library. Medusa has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Analysis of ensembles of metabolic network reconstructions

Support

Quality

Security

License

Reuse

Support

Medusa has a low active ecosystem.

It has 16 star(s) with 8 fork(s). There are 4 watchers for this library.

It had no major release in the last 12 months.

There are 25 open issues and 15 have been closed. On average issues are closed in 109 days. There are 9 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of Medusa is v0.2.1

Quality

Medusa has 0 bugs and 0 code smells.

Security

Medusa has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

Medusa code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

Medusa is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

Medusa releases are available to install and integrate.

Build file is available. You can build the component from source.

Medusa saves you 580 person hours of effort in developing the same functionality from scratch.

It has 1354 lines of code, 57 functions and 23 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed Medusa and discovered the below as its top functions. This is intended to give you an instant insight into Medusa implemented functionality, and help decide if they suit your requirements.

Iterative gapfill from binary phenotypes
Calculate the gapfill solution for the given model
Builds an ensemble from gapfill solutions
Calculate the gap - fill algorithm
Validate the model
Returns the state of the given member
Performs a single gene deletion operation
Set the state of a specific member
Test whether a model is leak
Optimizes an ensemble
Constructs an ensemble of gap - fill solutions
Performs a single reaction deletion
Populates members from a list of models
Optimize the ensemble worker

Get all kandi verified functions for this library.

Medusa Key Features

No Key Features are available at this moment for Medusa.

Medusa Examples and Code Snippets

No Code Snippets are available at this moment for Medusa.

Community Discussions

Trending Discussions on Medusa

git-filter-repo multiple operations (regex filter, move files, keep other dir...)

Pandas compare all values of a column with different DataFrame and return column name (of a dif. DataFrame) where value matches

K8ssandra deployment "Error connecting to Node (endPoint=/tmp/cassandra.sock)"

How can I randomly assign powers to my heroes?

Filter/Map JSON in React to products

Is it possible to backup and restore Cassandra cluster using dsbulk?

Why do I get this error when I'm trying to create models from database?

Logback in a Java modular application not working

How to read file into class in C++?

Error when trying to retrieve from database

QUESTION

git-filter-repo multiple operations (regex filter, move files, keep other dir...)

Asked 2022-Jan-15 at 15:22

I'm trying to filter a repository with git-filter-repo. I was trying to do this by describing all my needed operations in a path file to be used in a --paths-from-file stanza as described in the documentation but I'm stuck in a last step to finalize this in one single and easy step.

Situation and expected result

My git working directory looks like this:

...

ANSWER

Answered 2022-Jan-15 at 15:22

Self answering as laying out the problem helped me spot the issue. I missed one important note in the documentation about path renaming.

Note: if you combine path filtering with path renaming, be aware that a rename directive does not select paths, it only says how to rename paths that are selected with the filters.

So one must describe all paths to be selected in the original repo prior to renaming them. Hence in my case the regex must be defined twice: once as a simple path filter and the other as a rename. The following path file is perfectly doing the job in a single run:

Source https://stackoverflow.com/questions/70720401

QUESTION

Pandas compare all values of a column with different DataFrame and return column name (of a dif. DataFrame) where value matches

Asked 2022-Jan-07 at 20:01

I'm trying to assign category per row of a dataset based on matching keywords from other dataset.

I compare df_ONE['columnname'] to every value of df_TWO
and if matching value found use column name of df_TWO where this value is located as a cell value of new column in df_ONE.

With example below, all the values of a new string would be non-sport (column name of df_TWO where the value is found)

df_ONE

...

ANSWER

Answered 2022-Jan-07 at 20:01

You need to reshape your second dataframe. You can do this with melt pretty easily.

Here is an example of what the melted df looks like:

Source https://stackoverflow.com/questions/70626440

QUESTION

K8ssandra deployment "Error connecting to Node (endPoint=/tmp/cassandra.sock)"

Asked 2022-Jan-05 at 01:25

I'm trying to run K8ssandra but the Cassandra container keeps failing with the following message (Repeating over and over):

...

ANSWER

Answered 2022-Jan-05 at 01:25

I was able to fix this by increasing the memory to 12Gi

Source https://stackoverflow.com/questions/70537865

QUESTION

How can I randomly assign powers to my heroes?

Asked 2021-Dec-22 at 00:39

I'm creating a hero game. I've created a dictionary containing magic powers, my problem is how can I create a method that will randomly assign 12 magic powers to 4 of my heroes (each hero get's 3 powers) without one magic power being assigned multiple times? Here's my code:

...

ANSWER

Answered 2021-Dec-22 at 00:39

This goes through the set of 12, and if you ask for more, it will reshuffle them again.

Source https://stackoverflow.com/questions/70443074

QUESTION

Filter/Map JSON in React to products

Asked 2021-Nov-29 at 05:33

i have this Json file, it was created by me so if I would have to do some restructuring, it will be welcome.

...

ANSWER

Answered 2021-Nov-27 at 19:42

First you should get your array of categories you need to show. Then based on this array of categories we can show data. So it can be like this:

Source https://stackoverflow.com/questions/70137601

QUESTION

Is it possible to backup and restore Cassandra cluster using dsbulk?

Asked 2021-Sep-28 at 17:33

I searched through the internet a lot and saw a lot of ways to backup and restore a Cassandra cluster, such as nodetool snapshot and Medusa. but my question is that can I use dsbulk to backup a Cassandra cluster. What are its limitations? Why doesn't anyone suggest that?

...

ANSWER

Answered 2021-Sep-28 at 17:33

It's possible to use it in some cases, but it's not practical because (that are primary, list could be bigger):

DSBulk put an additional load onto the cluster nodes because it's going through the standard read path. In contrast to that nodetool snapshot just create a hardlinks to the files with data, no additional load to the nodes
It's harder to implement incremental backups with DSBulk - you need to come with condition for SELECT that will find only data that changed since the last backup, so you need to have timestamp column, because you can't do the WHERE condition on the value of writetime function. Plus it will require rescanning of whole data anyway. Plus it's impossible to find what data were deleted. With nodetool snapshot, you just compare what files has changed since last backup, and backup only them.

Source https://stackoverflow.com/questions/69364605

QUESTION

Why do I get this error when I'm trying to create models from database?

Asked 2021-May-05 at 06:07

I'm trying to create models from my Oracle database 10g using Entity Framework Core 5 dbcontext scaffold:

...

ANSWER

Answered 2021-May-05 at 06:07

The fine manual says minimum oracle 11.2 for that provider

Upgrade your db or change provider

Source https://stackoverflow.com/questions/67395767

QUESTION

Logback in a Java modular application not working

Asked 2021-Apr-14 at 15:43

I am just starting to master modular applications and I have a problem with the logback.

Before modularity was introduced into the project, Logback successfully worked with the same settings.

As soon as I start working with the LoggerContext and add the line requires ch.qos.logback.classic to the module-info.java, the application crashes.

Crash occurs in the line receiving the logger:

...

ANSWER

Answered 2021-Apr-14 at 14:28

It is a bug in logback 1.3.0-alpha5
Add

Source https://stackoverflow.com/questions/67092557

QUESTION

How to read file into class in C++?

Asked 2021-Apr-12 at 17:05

I am reading File that contains

...

ANSWER

Answered 2021-Apr-12 at 17:05

This code reads your file and stores the data in the std::vector Info using stringstreams and other things to parse.

Source https://stackoverflow.com/questions/67061682

QUESTION

Error when trying to retrieve from database

Asked 2021-Feb-17 at 13:04

I have generated three classes from XSD schema:

...

ANSWER

Answered 2021-Feb-17 at 12:50

We are missing the medusa initialization code, but you should do something like this:

Source https://stackoverflow.com/questions/66242165

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Medusa

You can download it from GitHub.
You can use Medusa like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: