VCF-2-FHIR | Source code and examples for translation of VCF files

by openelimu Python Version: Current License: No License

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kandi X-RAY | VCF-2-FHIR Summary

VCF-2-FHIR is a Python library typically used in Healthcare, Pharma, Life Sciences applications. VCF-2-FHIR has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

VCF-formatted files are the lingua franca of next-generation sequencing, whereas HL7 FHIR is emerging as a standard language for electronic health record interoperability. A growing number of clinical genomics applications are emerging, based on the HL7 FHIR Genomics standard. Here, we provide an open source utility for converting variants from VCF format into HL7 FHIR Genomics format. A web-based conversion tool leveraging this utility is HERE. Details of the translation logic are on the wiki. Sample VCF files and corresponding FHIR Genomics instances are in the downloads folder.

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Quality

Security

License

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Support

VCF-2-FHIR has a low active ecosystem.

It has 9 star(s) with 5 fork(s). There are 5 watchers for this library.

It had no major release in the last 6 months.

There are 2 open issues and 2 have been closed. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of VCF-2-FHIR is current.

Quality

VCF-2-FHIR has no bugs reported.

Security

VCF-2-FHIR has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

VCF-2-FHIR does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

VCF-2-FHIR releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

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VCF-2-FHIR Key Features

No Key Features are available at this moment for VCF-2-FHIR.

VCF-2-FHIR Examples and Code Snippets

No Code Snippets are available at this moment for VCF-2-FHIR.

Community Discussions

No Community Discussions are available at this moment for VCF-2-FHIR.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install VCF-2-FHIR

You can download it from GitHub.
You can use VCF-2-FHIR like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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