owmeta | simple data access python library for data & facts about C
kandi X-RAY | owmeta Summary
kandi X-RAY | owmeta Summary
. The data and models required to simulate C. elegans are highly heterogeneous. Consequently, from a software perspective, a variety of underlying representations are needed to store different aspects of the relevant anatomy and physiology. For example, a NetworkX representation of the connectome as a complex graph enables questions to be asked about nearest neighbors of a given neuron. An RDF semantic graph representation is useful for reading and writing annotations about multiple aspects of a neuron, such as what papers have been written about it, properties it may have such as ion channels and neurotransmitter receptors, etc. A NeuroML representation is useful for answering questions about model morphology and simulation parameters. A Blender representation is a full 3D shape definition that can be used for calculations in 3D space. The diversity of underlying representations required for OpenWorm presents a challenge for data integration and consolidation. owmeta solves this challenge with a unified data access layer whereby different representations are encapsulated into an abstract view. This allows the user to work with objects related to the biological reality of the worm, and forget about which representation is being used under the hood. The worm itself has a unified sense of neurons, networks, muscles, ion channels, etc. and so should our code.
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Top functions reviewed by kandi - BETA
- Translate muscle cells
- Parse the author
- Load a BibTeX file
- Create a BibTeX parser
- Translate data source into cell list
- Translates the data source and returns it
- Generate synapse class
- Translate a data source into a neuron
- Parse a BibTeX file
- Convert a BibTeX entry to a document
- Translate a data source
- Show a single cell
- Get the evidence for the given identifier
- Extract data from the crossref
- Translate a data source into a Wormbase output
- Save the OWM schema
- Gather terms in the query
- Translate a data_source
- Gather query connections
- Return the neuron network
- Set the member of the object
- Return the context of the query context
- Get all terms in the cell
- Parse the authors
- Return an iterator over the current context
- Create a binary tree from a file
- Description of synapse class
owmeta Key Features
owmeta Examples and Code Snippets
Community Discussions
Trending Discussions on Utilities
QUESTION
I've been upgrading my CRA project to TailwindCSS 3, but now CSS nesting no longer works. Upon starting the server, the console spits out:
...ANSWER
Answered 2022-Feb-03 at 18:38This is mostly just bad news.
Create React App's Tailwind support means that they will detect tailwind.config.js
in the project and add tailwindcss
to their existing postcss
configuration. Source in CRA
The guide that Tailwind offers on their site creates a dummy postcss.config.js
- Making changes in this file does not change the actual postcss configuration. (misleading if anything)
This is a known issue currently - Github discussion on Tailwind support PR between Adam Wathan (Tailwind founder) and Ian Sutherland (CRA maintainer). But it does not seem like there is an intention to be fixed soon.
If you want to use nesting (or any PostCSS plugin really) is to eject from CRA using:
QUESTION
I'm attempting to create an apollo client
plugin for a Nuxt 3
application. It's currently throwing an error regarding a package called ts-invariant
:
ANSWER
Answered 2022-Jan-07 at 01:52Solved by including @apollo/client
and ts-invariant/process
into the nuxt build transpile like so:
QUESTION
Very first try on Nuxt3 via Nuxt3 Starter
I wonder how can I use tailwindcss in Nuxt3 Starter manually.
(Not via @nuxtjs/tailwindcss , because it's for Nuxt2, and not work with Nuxt3.)
I created a blank Nuxt3 project by
...ANSWER
Answered 2021-Oct-04 at 04:17Maybe your problem is because you need a tailwindcss.config.js
.
For this, simply type in the console:
QUESTION
In a fresh Laravel 9 installation, the URL processing from Laravel Mix does not work anymore.
npm outputs the following:
...ANSWER
Answered 2022-Feb-22 at 10:55Actually moving the css imports into resources/js/app.js
solves this problem. However, this results in the imported css to be included in the public/js/app.js
, not the public/css/app.css
.
QUESTION
I'm trying the create a 3D subscene with objects being labelled using Label objects in a 2D overlay. I've seen similar questions to mine on this subject, and they all point to using the Node.localToScene method on the node to be labelled in the 3D space. But this doesn't seem to work for my case. I've taken example code from the FXyz FloatingLabels example here:
The Label objects need to have their positions updated as the 3D scene in modified, which I've done but when I print out the coordinates returned by the Node.localToScene method, they're much too large to be within the application scene, and so the labels are never visible in the scene. I've written an example program that illustrates the issue, set up very similarly to the FXyz sample code but I've created an extra SubScene object to hold the 2D and 3D SubScene objects in order to plant them into a larger application window with slider controls. The 3D scene uses a perspective camera and shows a large sphere with coloured spheres along the x/y/z axes, and some extra little nubs on the surface for reference:
...ANSWER
Answered 2022-Feb-02 at 12:28If you follow what has been done in the link you have posted you'll make it work.
For starters, there is one subScene, not two.
So I've removed these lines:
QUESTION
I am new to angular and was following the documentation to build a basic app.
Node - v14.7.3
npm - 7.22.0
Angular CLI: 12.2.4
OS: win32 x64
@angular-devkit/architect 0.1202.4
@angular-devkit/build-angular 12.2.4
@angular-devkit/core 12.2.4
@angular-devkit/schematics 12.2.4
@schematics/angular 12.2.4
rxjs 6.6.7
typescript 4.3.5
So far all I have done is
npm install @angular/cli
followed by ng new firstApp
and ng serve
Following is the error that I am receiving,
...ANSWER
Answered 2021-Sep-10 at 07:17Try to install those modules separately npm install
:
QUESTION
I've installed tailwind using npm install tailwindcss
I then create my src/style.css file and include
ANSWER
Answered 2021-Dec-25 at 20:47You need to add a config js file for the tailwind engine, inside the config file use content
attribute to define where is your HTML or JS files, the new engine automatically looks inside these files and compiles only the classes that you used.
Check this video for more information:https://youtu.be/mSC6GwizOag?t=22
QUESTION
I am testing a library like follows:
...ANSWER
Answered 2022-Jan-20 at 14:01Here's the equivalent C++20 code to your first version of FromDateTime
:
QUESTION
I'm looking for ways to count the number of trailing newlines from possibly binary data either:
- read from standard input
- or already in a shell variable (then of course the "binary" excludes at least 0x0) using POSIX or coreutils utilities or maybe Perl.
This should work without temporary files or FIFOs.
When the input is in a shell variable, I already have the following (possibly ugly but) working solution:
...ANSWER
Answered 2022-Jan-18 at 13:29Using GNU awk for RT
and without reading all of the input into memory at once:
QUESTION
I want to create dark mode for a web site which use bootstrap. I have to add new root class which includes all boostrap colors. Here is my colors.scss:
...ANSWER
Answered 2021-Aug-07 at 20:32As explained here, there's no way to attach a class to :root
. However, you don't need this to achieve what you want.
Simply make a dark
class then you can add that as desired to the html or body tag.
Make all the needed theme color changes inside .dark{}, and then @import "bootstrap". When .dark
doesn't exist on the body, the theme colors will return to Bootstrap defaults.
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