GEM | Many physical systems in the world involve interactions

by palash1992 Python Version: v1.0.1 License: BSD-3-Clause

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | GEM Summary

GEM is a Python library typically used in User Interface applications. GEM has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has medium support. You can download it from GitHub.

Many physical systems in the world involve interactions between different entities and can be represented as graphs. Understanding the structure and analyzing properties of graphs are hence paramount to developing insights into the physical systems. Graph embedding, which aims to represent a graph in a low dimensional vector space, takes a step in this direction. The embeddings can be used for various tasks on graphs such as visualization, clustering, classification and prediction. GEM is a Python package which offers a general framework for graph embedding methods. It implements many state-of-the-art embedding techniques including Locally Linear Embedding, Laplacian Eigenmaps, Graph Factorization, Higher-Order Proximity preserved Embedding (HOPE), Structural Deep Network Embedding (SDNE) and node2vec. It is formatted such that new methods can be easily added for comparison. Furthermore, the framework implements several functions to evaluate the quality of obtained embedding including graph reconstruction, link prediction, visualization and node classification. It supports many edge reconstruction metrics including cosine similarity, euclidean distance and decoder based. For node classification, it defaults to one-vs-rest logistic regression classifier and supports other classifiers. For faster execution, C++ backend is integrated using Boost for supported methods. A paper showcasing the results using GEM on various real world datasets can be accessed through Graph Embedding Techniques, Applications, and Performance: A Survey. The library is also published as GEM: A Python package for graph embedding methods. Please refer to access the readme as a webpage. Update: Note that this is a library for static graph embedding methods. For evolving graph embedding methods, please refer DynamicGEM. We also recently released Youtube dynamic graph data set which can be found at YoutubeGraph-Dyn. The module was developed and is maintained by Palash Goyal.

Support

Quality

Security

License

Reuse

Support

GEM has a medium active ecosystem.

It has 1215 star(s) with 358 fork(s). There are 42 watchers for this library.

It had no major release in the last 12 months.

There are 11 open issues and 81 have been closed. On average issues are closed in 58 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of GEM is v1.0.1

Quality

GEM has 0 bugs and 0 code smells.

Security

GEM has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

GEM code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

GEM is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

GEM releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

GEM saves you 826 person hours of effort in developing the same functionality from scratch.

It has 1896 lines of code, 112 functions and 29 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed GEM and discovered the below as its top functions. This is intended to give you an instant insight into GEM implemented functionality, and help decide if they suit your requirements.

r Evaluate static link prediction .
Reverse GRR algorithm .
Evaluate static graph reconstruction .
Write a version . py file .
Generate an adjacency matrix .
Batch generator .
Setup the package .
Run expps .
Expression Network Classification .
Compute static link prediction .

Get all kandi verified functions for this library.

GEM Key Features

No Key Features are available at this moment for GEM.

GEM Examples and Code Snippets

No Code Snippets are available at this moment for GEM.

Community Discussions

Trending Discussions on GEM

In a Rails engine Is it possible for Rspec to make use of Rspec support system helpers from another engine?

Expo eas-cli iOS build failing

visit_Psych_Nodes_Alias: Unknown alias: default (Psych::BadAlias)

EFK system is build on docker but fluentd can't start up

Rails 7 asset pipeline SassC::SyntaxError with Tailwind

Unicode Normalization not appropriate for ASCII-8BIT

Rails 7 Ruby 3.1 LoadError: cannot load such file -- net/smtp

Rails bundle install Could not find turbo-rails-7.1.1 in any of the sources

Faraday::Connection without adapter has been made. CICD on Gitlab

Error when trying to install devise in Ruby on Rails 7.0.0

QUESTION

In a Rails engine Is it possible for Rspec to make use of Rspec support system helpers from another engine?

Asked 2022-Apr-05 at 05:19

Given a Rails engine_one that has a spec support file engine_one/spec/support/system/order_functions.rb, containing functionality to support the testing of various order system tests such as simulating a logged in user, adding products to an order etc and contains methods such as log_visitor_in that get used extensively when testing order processing etc...

So now in engine_two that extends some ordering functionality from engine_one I wish to add a new system test that first has to log a visitor in. So how can I make use of that support method from from engine_one?

So far I have mounted the engines in the dummy app I have required engine_one in engine_two/lib/engine.rb I have required the support file in the relevant test but it can't be found and obviously I have added engine_one to engine_two.gemspec

engine_two/spec/rails_helper.rb

...

ANSWER

Answered 2022-Apr-05 at 05:19

When you require a file, ruby searches for it relative to paths in $LOAD_PATH; spec/ or test/ are not part of it.

app directory is a special one in rails, any subdirectory automatically becomes part of autoload_paths. Auto load paths can be seen here ActiveSupport::Dependencies.autoload_paths.

Any classes/modules defined inside app/* directories can be used without requiring corresponding files. Rails v7 uses zeitwerk to automatically load/reload files by relying on the 'file name' to 'constant name' relationship. That's why folders map to namespaces and files map to classes/modules.

To fix your issue put any shared code where it can be grabbed with require. Type $LOAD_PATH in the console:

Source https://stackoverflow.com/questions/71362333

QUESTION

Expo eas-cli iOS build failing

Asked 2022-Mar-24 at 03:11

I have created an app using React Native and am trying to create an iOS app store build through Expo's eas-cli.

When running eas build --platform ios the Fastlane build failed with unknown error

After checking the "Run Fastlane" section in the Expo build log, multiple errors are shown:

Error 1:

...

ANSWER

Answered 2021-Oct-06 at 06:11

There are a number of things to look into.
If you are running Expo in the SDK then no need for cocoa pods just the most up-to-date version of the CLI tool.

Run expo --version to determine what version you are currently working with. Update if needed.

Adding a profile might be useful too. Along with checking your config. Configuring EAS Build with eas.json

eas build --platform ios --profile distribution

Also, be sure that all the apple certificates are active and connected to your Expo account for that project.

Source https://stackoverflow.com/questions/69155305

QUESTION

visit_Psych_Nodes_Alias: Unknown alias: default (Psych::BadAlias)

Asked 2022-Mar-19 at 10:21

I updated from ruby 2.7.1 to 3.1.1, then removed Gemfile.lock and ran bundle update (it's on a dev branch, so I can throw it away if this is a bad idea, I just wanted to see if it would work).

bundle update succeeds, but when I start the server:

...

ANSWER

Answered 2022-Mar-19 at 10:21

The problem is related to the Ruby 3.1 / Psych 4.x incompatibility described in this issue: https://bugs.ruby-lang.org/issues/17866

Ruby 3.0 comes with Psych 3, while Ruby 3.1 comes with Psych 4, which has a major breaking change (diff 3.3.2 → 4.0.0).

The new YAML loading methods (Psych 4) do not load aliases unless they get the aliases: true argument.
The old YAML loading methods (Psych 3) do not support the aliases keyword.

At this point, it seems like anyone, anywhere that wants to load YAML in the same way it worked prior to Ruby 3.1, need to do something like this:

Source https://stackoverflow.com/questions/71191685

QUESTION

EFK system is build on docker but fluentd can't start up

Asked 2022-Feb-27 at 16:59

I want to build the efk logger system by docker compose. Everything is setup, only fluentd has problem.

fluentd docker container logs

2022-02-15 02:06:11 +0000 [info]: parsing config file is succeeded path="/fluentd/etc/fluent.conf"

2022-02-15 02:06:11 +0000 [info]: gem 'fluent-plugin-elasticsearch' version '5.0.3'

2022-02-15 02:06:11 +0000 [info]: gem 'fluentd' version '1.12.0'

/usr/local/lib/ruby/2.6.0/rubygems/core_ext/kernel_require.rb:54:in `require': cannot load such file -- elasticsearch/transport/transport/connections/selector (LoadError)

my directory:

...

ANSWER

Answered 2022-Feb-15 at 11:35

I faced the same problem, but I used to make exactly the same image where everything works to this day. I can't figure out what has changed.

But if you need to urgently solve the problem, use my in-person image:

Source https://stackoverflow.com/questions/71120621

QUESTION

Rails 7 asset pipeline SassC::SyntaxError with Tailwind

Asked 2022-Feb-19 at 03:31

I'm working on getting a new Rails 7 project deployed to production (trying on both Heroku and Render.com) and am getting the following error during build:

...

ANSWER

Answered 2021-Dec-18 at 05:58

From rails tailwind readme

Tailwind uses modern CSS features that are not recognized by the sassc-rails extension that was included by default in the Gemfile for Rails 6. In order to avoid any errors like SassC::SyntaxError, you must remove that gem from your Gemfile.

https://github.com/rails/tailwindcss-rails

Source https://stackoverflow.com/questions/70401077

QUESTION

Unicode Normalization not appropriate for ASCII-8BIT

Asked 2022-Jan-26 at 11:38

13: from /usr/local/bin/pod:23:in `'
12: from /usr/local/bin/pod:23:in `load'
11: from /Library/Ruby/Gems/2.6.0/gems/cocoapods-1.11.0.beta.2/bin/pod:55:in `'
10: from /Library/Ruby/Gems/2.6.0/gems/cocoapods-1.11.0.beta.2/lib/cocoapods/command.rb:52:in `run'
9: from /Library/Ruby/Gems/2.6.0/gems/claide-1.0.3/lib/claide/command.rb:324:in `run'
8: from /Library/Ruby/Gems/2.6.0/gems/claide-1.0.3/lib/claide/command.rb:337:in `rescue in run'
7: from /Library/Ruby/Gems/2.6.0/gems/claide-1.0.3/lib/claide/command.rb:396:in `handle_exception'
6: from /Library/Ruby/Gems/2.6.0/gems/cocoapods-1.11.0.beta.2/lib/cocoapods/command.rb:66:in `report_error'
5: from /Library/Ruby/Gems/2.6.0/gems/cocoapods-1.11.0.beta.2/lib/cocoapods/user_interface/error_report.rb:30:in `report'
4: from /Library/Ruby/Gems/2.6.0/gems/cocoapods-1.11.0.beta.2/lib/cocoapods/user_interface/error_report.rb:105:in `markdown_podfile'
3: from /Library/Ruby/Gems/2.6.0/gems/cocoapods-1.11.0.beta.2/lib/cocoapods/config.rb:226:in `podfile_path'
2: from /Library/Ruby/Gems/2.6.0/gems/cocoapods-1.11.0.beta.2/lib/cocoapods/config.rb:166:in `installation_root'
1: from /Library/Ruby/Gems/2.6.0/gems/cocoapods-1.11.0.beta.2/lib/cocoapods/config.rb:166:in `unicode_normalize'
/System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/lib/ruby/2.6.0/unicode_normalize/normalize.rb:141:in `normalize': Unicode Normalization not appropriate for ASCII-8BIT (Encoding::CompatibilityError)

...

ANSWER

Answered 2021-Sep-07 at 18:03

I fixed it doing this:

I uninstalled completely cocoapods (my version was 1.11.0)

gem list --local | grep cocoapods

cocoapods-core (1.11.0) cocoapods-deintegrate (1.0.5) cocoapods-downloader (1.5.0) cocoapods-plugins (1.0.0) cocoapods-search (1.0.1) cocoapods-trunk (1.6.0) cocoapods-try (1.2.0)

sudo gem uninstall cocoapods

sudo gem uninstall cocoapods-core

sudo gem uninstall cocoapods-deintegrate

sudo gem uninstall cocoapods-downloader

sudo gem uninstall cocoapods-plugins

sudo gem uninstall cocoapods-search

sudo gem uninstall cocoapods-trunk

sudo gem uninstall cocoapods-try

Then i installed cocoapods version 1.10.1 (you can try with more versions under 1.11.0 if you need)

sudo gem install cocoapods -v 1.10.1

Source https://stackoverflow.com/questions/68809929

QUESTION

Rails 7 Ruby 3.1 LoadError: cannot load such file -- net/smtp

Asked 2022-Jan-25 at 16:15

I upgraded to Rails 7 and Ruby 3.1. While trying to run tests with rspec I got the error below. How can I fix it?

...

ANSWER

Answered 2022-Jan-25 at 16:15

UPD: on January 6th, 2022 Rails 7.0.1 was released:

The focus of this release is bring support to Ruby 3.1

Amongh other Ruby 3.1-related issues it brought a fix for this problem. So upgrade to Rails >= 7.0.1.

Add gem 'net-smtp', require: false to your Gemfile and run bundle.

Similarly I assume you may have problems with net-imap and net-pop and so have to add them until a new mail gem version is released.

Related pull requests and issues:

Source https://stackoverflow.com/questions/70500220

QUESTION

Rails bundle install Could not find turbo-rails-7.1.1 in any of the sources

Asked 2022-Jan-21 at 18:20

On a brand new digitalocean droplet running Ubuntu 20.10 with a brand new pretty near empty rails 7 alpha 2 app running bundle install results in the following both when running cap production deploy on my local machine and when running from the command shell on the droplet

...

ANSWER

Answered 2021-Nov-09 at 14:37

I ran into this also. Not sure why, but they yanked the 7.x versions and regressed to 0.8.x:

https://rubygems.org/gems/turbo-rails/versions/7.1.1

Just add this to your Gemfile:

Source https://stackoverflow.com/questions/69891921

QUESTION

Faraday::Connection without adapter has been made. CICD on Gitlab

Asked 2022-Jan-05 at 13:50

everything was going well, before this morning, I'm totally new to cicd and things like that so I write this to deploy my app to heroku

...

ANSWER

Answered 2022-Jan-05 at 04:58

I faced the same problem today. Apparently there is some problem in the latest version of FARADAY, at the moment. I solved it this way: add manual installation of the previous version of the dependency to your .gitlab.yml, and everything will work. Have a nice day.

Source https://stackoverflow.com/questions/70585976

QUESTION

Error when trying to install devise in Ruby on Rails 7.0.0

Asked 2022-Jan-04 at 03:31

I'm trying to install devise in the rails version I get the error of the latest version of devise

I have tried with other devise versions but it is update it to the latest,

this is the error:

...

ANSWER

Answered 2022-Jan-04 at 03:31

Source of the Error

The version of Devise you're using calls a method named reference. https://github.com/heartcombo/devise/blob/c82e4cf47b02002b2fd7ca31d441cf1043fc634c/lib/devise.rb#L320-L323

Source https://stackoverflow.com/questions/69229112

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install GEM

The package uses setuptools, which is a common way of installing python modules. To install in your home directory, use:.

Support

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