jenks | Cython implementation of jenks breaks | Machine Learning library
kandi X-RAY | jenks Summary
kandi X-RAY | jenks Summary
The history and intent of the Jenks natural breaks algorithm is well covered by.
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QUESTION
For a set of subjects I have a continuous variable with range 0-100 representing a quantification of a subject's state cont_attribute
. For each subject I also have an ordinal variable representing reader annotation of subject's state as one of four states (e.g. 1, 2, 3, 4) class_label
. Values for cont_attribute
overlap between classes. My goal is to discretize cont_attribute
so that agreement with class is optimized.
When discretizing cont_attribute
, arbitrary thresholds x1
, x2
, x3
can be applied to the continuous variable directly, to yield bins of four ordinal categories and agreement with reader annotation class can be assessed:
ANSWER
Answered 2021-Sep-14 at 11:06The error message is not too hard. The pandas cut
method demands that the cut vector
[0,x1,x2,x3,100]
is strictly monotinic. By having some mechanism to make sure that no invalid values are passed to the cut
function, we are safe. That is what I implemented below. To denote an invalid
setting, it is customary to use np.inf
since all other values are lower. Therefore, every minizmier would say such an invalid is undesirable as a solution. See below for the implementation. I also included all the imports and some data generation, so that it is simple to use the code. Please do so in future questions as well.
You might want to use more than 10 bins per dimension in the brute force search.
Also - the code is quite inefficient. Since it brute forces over all combinations of x1, x2, x3, but a lot of them are invalid (e.g. x2<=x1), you might want to parametrize the problem in (x1,x2-x1, x3-x2) instead, and search over nonnegative values in the second and third component.
Finally, the brute
method is a minimizer, so you should return -cohen_kappa
from the objective
QUESTION
I've been working on a site for school, and for some reason when I attempt to change the link for the source the console outputs
...ANSWER
Answered 2020-Sep-24 at 18:12It looks like the problem was mismatching the start and end span/p tags for the para
information.
HTML with mismatched opening and closing tags causes the javascript DOM parser to miss elements despite them actually being on the page.
QUESTION
I'm trying to create some boxplots in R. I've been using both ggboxplot and ggplot. This is my code and output so far:
ggboxplot:
...ANSWER
Answered 2020-Sep-22 at 16:14Welcome to SO!
Adding custom labels to ggplot2
is notoriously difficult, and I believe this is by design. All legends are controlled by the arguments placed in aes
and scale_*_[continuoues|discrete|manual]
. If we don't want to start learning how to grob
(likely spending several hours) we can however achieve the desired output by
- Adding are statistic to the data itself
- Create a column indicating which is the statistic and which is data points
- Abuse that we can subset the data directly in our
geom_*
function to create a specific layer forjitter
and non-jitter
ed points, and set the shape in the aestethics of these layers - Customize the marks using
scale_shape_manual
(orscale_shape_discrete
).
Using the mtcars
dataset as an example (and dplyr
for piping) we can obtain something very similar to ggboxplot
QUESTION
So I have a variable as below.
...ANSWER
Answered 2020-Jul-30 at 20:40Your description sounds like you're wanting to plot a histogram of var
. This can be done easily enough in ggplot
using geom_histogram
. The key here is that ggplot
likes to have a data frame, so you just have to specify your variable in a dataframe first, which you can do inside the ggplot()
function:
QUESTION
I have a long data set where each row is a state's income tax rate for that year. Here are a few rows as an example:
...ANSWER
Answered 2020-Jul-12 at 20:54We can use quantile
with cut
to create a column after grouping by the group columns 'year'
QUESTION
I have a large spatial data frame, head
information here:
ANSWER
Answered 2020-Feb-24 at 23:12Without a reproducible example of your dataset, it's hard to be sure of the solution to your question, but maybe you can plot your data with ggplot2
after converting it to a sf object and then use geom_sf
:
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Install jenks
You can use jenks like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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