dFBA | Dynamic Flux Balance analysis in Python

 by   pstjohn Python Version: Current License: GPL-3.0

kandi X-RAY | dFBA Summary

kandi X-RAY | dFBA Summary

dFBA is a Python library. dFBA has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Dynamic Flux Balance analysis in Python
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            kandi-support Support

              dFBA has a low active ecosystem.
              It has 9 star(s) with 1 fork(s). There are 2 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              dFBA has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of dFBA is current.

            kandi-Quality Quality

              dFBA has no bugs reported.

            kandi-Security Security

              dFBA has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              dFBA is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              dFBA releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.

            Top functions reviewed by kandi - BETA

            kandi has reviewed dFBA and discovered the below as its top functions. This is intended to give you an instant insight into dFBA implemented functionality, and help decide if they suit your requirements.
            • Returns the maximum y value
            • Get reaction result
            • Create an Extension object for the given extension
            • Return a list of files in a directory
            • Returns the minimum y value
            • Returns the maximum number of dot products
            • The minimum of the dot dot
            Get all kandi verified functions for this library.

            dFBA Key Features

            No Key Features are available at this moment for dFBA.

            dFBA Examples and Code Snippets

            No Code Snippets are available at this moment for dFBA.

            Community Discussions

            QUESTION

            Install a package with Docker in Ubuntu
            Asked 2020-Oct-14 at 06:17

            I want to install a package by docker, following instruction in: https://dynamic-fba.readthedocs.io/en/latest/installation.html#installing-from-source

            I installed ubuntu and then Docker. But I don't understand what I need to do next. There it is said to type (docker run -it -v ${PWD}:/opt/examples davidtourigny/dfba python3 examples/example1.py). I excatly type it in ubuntu but I get this error:

            docker: Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?. See 'docker run --help'.

            Using alternative method of dockerfile, I also get error. I don't know how to make use of make build, but used build instead following tutorials on the web.

            It's my first time using Docker and I don't know what to do.

            Any help is very appreciated.

            ...

            ANSWER

            Answered 2020-Oct-14 at 05:48

            The Docker application has two components, a back-end server, and a front-end cli. This way you can do cool stuff like control Docker remotely or have orchestration frameworks that manage multiple Docker nodes over the network like Kubernates.

            For security, the Docker back-end server is not exposed on a normal TCP port but it uses a unix domain socket (Linux magic that makes a file act as a port) at unix:///var/run/docker.sock.

            When you execute docker run -it ... the cli application will attempt to connect to the backend server, but it looks like the daemon/server is probably not running.

            Try to check that daemon is running. If you are using systemd you can check with systemctl status docker and start if is stopped with systemctl start docker finally it might be good to enable it to make sure it starts automatically on reboot, you can do that with systemctl enable docker

            Source https://stackoverflow.com/questions/64343881

            QUESTION

            Error when retreiving values from a single cells in a pandas dataframe
            Asked 2020-Apr-02 at 10:52

            I have a pandas dataframe with 1 row, I am trying to extract the values from certain columns to do calculations, error : TypeError: 'NoneType' object is not subscriptable

            Failure happends where I have added - **

            Code:

            ...

            ANSWER

            Answered 2020-Apr-02 at 00:25

            This code works for me in pandas 1.0.1. Are your df columns used in your calculations numeric data types? Do you have a typo somewhere?

            Source https://stackoverflow.com/questions/60981353

            QUESTION

            Generate Powerset of length 4 using Java-8 is possible
            Asked 2020-Jan-21 at 10:20

            I have been able to generate the all permutation of length 4 from a string, the problem that I am facing now is that all the permutation have duplicates like {abcd) ,{adbc},{bcda}...which are all same as from Mathematical definition of set.

            Is there a short version in java-8 where I can get the pure set?

            My code that generated the all permutation:

            ...

            ANSWER

            Answered 2020-Jan-21 at 09:44

            If you want to find the unique words (without considering order of characters, as you mentioned), you can do one additional step after permutation is done.

            Source https://stackoverflow.com/questions/59837964

            QUESTION

            How to position Canvas with agents in classical Agent-Based Modeling in AnyLogic
            Asked 2019-Nov-15 at 05:53

            I'm new to AnyLogic and trying to figure out how Agent-based models should be set there. There is a famous Epidemic model, which I'm trying to reproduce. Most tutorials on classical ABM deal with old GUI settings.

            For example, in version 8.5+, which is actual now, the Environment object (that was used for positioning of layouts) has been deprecated.

            Now I see that new object Canvas is used to put the layout with agents on the page. But the structure of source code file is a bit unclear for me and I've failed to find relevant description how Canvas can be set for the purpose. (Besides I'm not sure that this is recommended way of doing this task.)

            Question: I would love to learn the right way to arbitrary position the area with agents on the page. Below you may see what I get by default.

            ...

            ANSWER

            Answered 2019-Nov-15 at 05:53

            After some playing around, the 'minimalistic' functionality is as follows.

            1. One should create some population with arbitrary name Person (population name people adds automatically).

            2. The following structure of the Project is to be reproduced (arbitrary names are marked with yellow).

            Comment: after adding a Canvas called mapCanvas one adds the function setCanvasCellColor with following body:

            mapCanvas.fillCircle(person.getX(), person.getY(), 3, color);

            It is clear that former two arguments stand for coordinates of a given point, then its size (i.e. 3) and color. Do not forget to add two arguments used in the body, namely, person as Person and color as Color.

            1. From Entry Action of the statechart named state call the just made function. I've put black color here just for the sake of demonstration; chartreuse constant gets used instead in the Epidemic example.

            main.setCanvasCellColor(this, black);

            1. Finally, you may run the model to get the following picture.

            Note If one is reluctant to bother with Canvas, use Main - Presentation - xxx_presentation and click Draw agent with offset to this position checkbox.

            Source https://stackoverflow.com/questions/58825539

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install dFBA

            You can download it from GitHub.
            You can use dFBA like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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