SnapTools | A module for working with snap files in Python

by r3fang Python Version: 1.4.8 License: Apache-2.0

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | SnapTools Summary

SnapTools is a Python library. SnapTools has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install SnapTools' or download it from GitHub, PyPI.

snap (Single Nucleus Accessibility Profile) file is a hierarchically structured hdf5 file that is specially designed for storing single nucleus ATAC-seq datasets. A snap file (version 4) contains the following sessions: header (HD), cell-by-bin accessibility matrix (AM), cell-by-peak matrix (PM), cell-by-gene matrix (GM), barcode (BD) and fragment (FM).

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Support

SnapTools has a low active ecosystem.

It has 17 star(s) with 18 fork(s). There are 3 watchers for this library.

It had no major release in the last 12 months.

There are 24 open issues and 7 have been closed. On average issues are closed in 4 days. There are 4 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of SnapTools is 1.4.8

Quality

SnapTools has 0 bugs and 0 code smells.

Security

SnapTools has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

SnapTools code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

SnapTools is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

SnapTools releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

It has 2658 lines of code, 68 functions and 16 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed SnapTools and discovered the below as its top functions. This is intended to give you an instant insight into SnapTools implemented functionality, and help decide if they suit your requirements.

Dump a BED file to a BED file
Get barcodes from a snap file
Get the fragments from the given barcode
Get barcodes from txt file
Read alignment info from file
Reads alignment info from a bam file
Check if a file is a BAM file
Calculate the coverage of a barcode
Get the coverage from a BAM file
Find the minimum edit distance between two strings
Compute the edit distance between two strings
Read genome size from a BAM file
Check file format
Check if a file is a BED file
Check if a file is a GFF file
Get the barcodes from input file
Get barcodes from a bed file
Get barcodes from bam
Read a GTF file
Parse GTF file
Get value from value
Yield lines from a file
Check if a file is a sorted query name
Check if a bed query name is sorted
Checks if a bam query name is sorted
Group reads by barcode

Get all kandi verified functions for this library.

SnapTools Key Features

No Key Features are available at this moment for SnapTools.

SnapTools Examples and Code Snippets

No Code Snippets are available at this moment for SnapTools.

Community Discussions

No Community Discussions are available at this moment for SnapTools.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install SnapTools

Install snaptools from PyPI. Install snaptools from source code.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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