motif | melodic object transcription framework | Machine Learning library

 by   rabitt Python Version: v1.1.2 License: MIT

kandi X-RAY | motif Summary

kandi X-RAY | motif Summary

motif is a Python library typically used in Artificial Intelligence, Machine Learning applications. motif has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has high support. You can download it from GitHub.

[Coverage Status] This library, inspired by [Uri Nieto’s] [msaf] contains implementations of different melody transcription algorithms, broken down into independent modular components. This makes it easy to compare algorithms and test different combinations of components.
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            kandi-support Support

              motif has a highly active ecosystem.
              It has 23 star(s) with 2 fork(s). There are 7 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 6 open issues and 4 have been closed. On average issues are closed in 8 days. There are no pull requests.
              OutlinedDot
              It has a negative sentiment in the developer community.
              The latest version of motif is v1.1.2

            kandi-Quality Quality

              motif has 0 bugs and 0 code smells.

            kandi-Security Security

              motif has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              motif code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              motif is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              motif releases are available to install and integrate.
              Build file is available. You can build the component from source.
              motif saves you 1570 person hours of effort in developing the same functionality from scratch.
              It has 3493 lines of code, 427 functions and 43 files.
              It has medium code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed motif and discovered the below as its top functions. This is intended to give you an instant insight into motif implemented functionality, and help decide if they suit your requirements.
            • Compute the contour shape of a contour
            • Computes the goodness of the overlap between two periods
            • Fits a polynomial polynomial
            • Fits a normalized cosine using the cosine function
            • Computes the contours of the sound stream
            • Calculate peak streaming
            • Compute the salience salience function
            • Compute salience function
            • Plot a contour with annotation
            • Return the contour of the given index
            • Load an annotation file
            • Return the contour for a given index
            • Compute the contours of the model
            • Sorts the contours
            • Post - process contours
            • Preprocess the audio file
            • Compute the contours of the given audio file
            • Load contours from csv file
            • Compute the contours of the signal
            • Get the frequency grid for the signal
            • Plot the contour
            • Fits the polynomial fit of a signal
            • Compute the ratio of the predicted features
            • Fit the model
            • Process audio data
            • Check if a binary is installed
            Get all kandi verified functions for this library.

            motif Key Features

            No Key Features are available at this moment for motif.

            motif Examples and Code Snippets

            No Code Snippets are available at this moment for motif.

            Community Discussions

            QUESTION

            Create a list that represents all the possible paths an individual can take
            Asked 2021-Jun-01 at 12:41

            The below dataframe represents presumed residence of a set of individuals:

            ...

            ANSWER

            Answered 2021-Jun-01 at 12:41

            Use more_itertools.powerset which will result in list of tuples so convert it into list of list using map()

            Source https://stackoverflow.com/questions/67788862

            QUESTION

            Problem with checkbox in DataGridTemplateColumn
            Asked 2021-May-27 at 19:26

            I need help to finish my first little app. I'm trying to do action for checked's rows in a datagrid.

            the xaml :

            ...

            ANSWER

            Answered 2021-May-25 at 07:47

            I had constructed the rest of the code in order to show you the working copy.

            I assume you have a class object which you are binding as an items source to data-grid. FYI, I have created my own class object. See below and change as per your class file.

            Step 1 - Class creation

            Source https://stackoverflow.com/questions/67668890

            QUESTION

            Find Word Count"- My code doesn't work properly
            Asked 2021-May-25 at 17:41

            "Find Word Count"- Instructions: Given an input string (assume it's essentially a paragraph of text) and a word to find, return the number of times in the input string that the word is found. Should be case agnostic and remove space, commas, full stops, quotes, tabs etc while finding the matching word.

            =======================

            My code doesn't work properly.

            ...

            ANSWER

            Answered 2021-May-25 at 17:41

            In your code you are not checking complete word. So, its matching both 'be' and 'because'. You're checking if there are any sub-strings contains the word 'be'. Could you please try below solution using regex? It will solve your purpose:

            Source https://stackoverflow.com/questions/67692527

            QUESTION

            How to use awk to search for strings in a while read loop
            Asked 2021-May-12 at 16:12

            I would like to loop through file1, which has two columns. Each column has a string that I would like to use to search in a dataframe file (file2) with 18 columns. I'd like to select rows from file2 that have both strings from file1 in two different columns to create a new file.

            file1 (tab separated file with about 150 rows, it has no header)

            ...

            ANSWER

            Answered 2021-May-12 at 15:22

            You may try this awk that stores all value from 1st column in region array and 2nd column in motif array while going through file1. Later we print records from file2 if $18 is found in region array and $15 is found in motif array:

            Source https://stackoverflow.com/questions/67506169

            QUESTION

            How to associate two lists or columns?
            Asked 2021-Apr-29 at 16:59

            Code/Program:

            ...

            ANSWER

            Answered 2021-Apr-29 at 16:59

            Your code is somewhat inefficient in the sense that it repeatedly splits the all the lines up. In the code below, this is only done once when they are first read in from the file. In addition, after reading they're transposed into columns of row since most of the processing is done with respect to what in each column.

            Source https://stackoverflow.com/questions/67309853

            QUESTION

            How to get unique values/elements of a column?
            Asked 2021-Apr-27 at 15:49

            I am trying to get the unique values of a column from a tab. The values are repeated and the file has 1,000+ lines, I just want to have the names of the values, not all, and the ones that are repeated. I'm working on my code, but when I do "RUN" it generates the separate and random letters of the values (see example in 'Output' below). I hope someone can help me find my mistake. Please and thank you very much!

            Code:

            ...

            ANSWER

            Answered 2021-Apr-27 at 14:11

            features is just one string in one line of the file, not all the strings in that column.

            Add each word to the unique_list set in the loop, and print the set at the end.

            Source https://stackoverflow.com/questions/67275587

            QUESTION

            Why am I getting uneven vertical padding in a Motif Widget List?
            Asked 2021-Apr-11 at 14:00

            I am using a Motif Widget Scrolledlist. The list is created as follows:

            ...

            ANSWER

            Answered 2021-Apr-11 at 14:00

            Each item contains a newline character; remove it.

            I am also wondering why the focus is displayed with such a strong dotted line.

            That is set by the list widget's resource XmNhighlightThickness, whose default value is 2.

            Source https://stackoverflow.com/questions/67042738

            QUESTION

            Creating an option menu in Motif
            Asked 2021-Apr-06 at 17:53

            I am trying to create an option menu using Motif toolkit.

            If I try this, it works:

            ...

            ANSWER

            Answered 2021-Apr-06 at 17:53

            Add after the line:

            XtManageChild(option_menu);

            Code to manage the form:

            XtManageChild(form);

            This will show the option menu.

            Source https://stackoverflow.com/questions/66966471

            QUESTION

            Generating strings of length l with hamming distance d
            Asked 2021-Mar-27 at 16:02

            I’m working on a variation of the Motif Search Problem and have hit a block on the logic of one of the subparts.

            The problem is:

            You have the alphabet — ['A', 'C', 'G', 'T']

            Now, you are given an array of strings made of these alphabets with length L and are given a hamming distance D.

            For example, if we take L=3, d=2 and are given the array ["ACT","TGC","GTA"].

            For each string in the array, we must generate strings of the same length (3 in this case) using the alphabet which have a hamming distance of d. The hamming distance d means that the final string will only have d edits (two if d = 2) as compared to the original string.

            So if we take the example of ACT from the array, we must generate GTT, AAG, CGT and so on. And I want to store these generated strings in a list.

            A recursive function that breaks down the string seems like the most efficient way to do it but I’m having trouble implementing it. Any ideas for the logic explained with code/pseudocode? I need to be able to extend this problem to L = 15 and d = 5.

            Example of Hamming distance d = 1.

            ...

            ANSWER

            Answered 2021-Mar-09 at 01:02

            This can get you started. It doesn't handle creating strings of different length than the source. Perhaps you could add that.

            JavaScript code:

            Source https://stackoverflow.com/questions/66534678

            QUESTION

            TFBS search with TFBSTools and a for loop
            Asked 2021-Mar-26 at 20:57

            I am currently looking for TFBS motifs in DNA. The original code I wrote to look for 10 different transcription factor motifs worked beautifully. But now I want to search for more than 100 motifs. Therefore I want to use loops so that I dont have to type in all the motif names manually (and can easily change my list if my interests change). But when I do this my code no longer works. I can print the result of the loops and it looks like the list contains all the correct information, but when I then use this list to compare with my DNA the list seems to only remember the last item of the list.

            Here is my original code that works:

            ...

            ANSWER

            Answered 2021-Mar-26 at 20:57

            You don't really need to run this in a loop; most of these commands can deal with lists. Try something like this:

            Source https://stackoverflow.com/questions/66821692

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install motif

            You can download it from GitHub.
            You can use motif like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            Documentation can be found [here](http://motif.readthedocs.io).
            Find more information at:

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            https://github.com/rabitt/motif.git

          • CLI

            gh repo clone rabitt/motif

          • sshUrl

            git@github.com:rabitt/motif.git

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