BCDU-Net | BCDU-Net : Medical Image Segmentation | Machine Learning library

 by   rezazad68 Python Version: Current License: No License

kandi X-RAY | BCDU-Net Summary

kandi X-RAY | BCDU-Net Summary

BCDU-Net is a Python library typically used in Artificial Intelligence, Machine Learning, Deep Learning, Pytorch, Tensorflow, Keras applications. BCDU-Net has no bugs, it has no vulnerabilities and it has low support. However BCDU-Net build file is not available. You can download it from GitHub.

Deep auto-encoder-decoder network for medical image segmentation with state of the art results on skin lesion segmentation, lung segmentation, and retinal blood vessel segmentation. This method applies bidirectional convolutional LSTM layers in U-net structure to non-linearly encode both semantic and high-resolution information with non-linearly technique. Furthermore, it applies densely connected convolution layers to include collective knowledge in representation and boost convergence rate with batch normalization layers. If this code helps with your research please consider citing the following papers:. R. Azad, M. Asadi, Mahmood Fathy and Sergio Escalera "Bi-Directional ConvLSTM U-Net with Densely Connected Convolutions ", ICCV, 2019, download link. M. Asadi, R. Azad, Mahmood Fathy and Sergio Escalera "Multi-level Context Gating of Embedded Collective Knowledge for Medical Image Segmentation", The first two authors contributed equally. arXiv:2003.05056, 2020, download link.
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            kandi-support Support

              BCDU-Net has a low active ecosystem.
              It has 551 star(s) with 224 fork(s). There are 7 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 4 open issues and 36 have been closed. On average issues are closed in 13 days. There are 5 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of BCDU-Net is current.

            kandi-Quality Quality

              BCDU-Net has 0 bugs and 0 code smells.

            kandi-Security Security

              BCDU-Net has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              BCDU-Net code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              BCDU-Net does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              BCDU-Net releases are not available. You will need to build from source code and install.
              BCDU-Net has no build file. You will be need to create the build yourself to build the component from source.
              Installation instructions are not available. Examples and code snippets are available.
              It has 1641 lines of code, 45 functions and 17 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed BCDU-Net and discovered the below as its top functions. This is intended to give you an instant insight into BCDU-Net implemented functionality, and help decide if they suit your requirements.
            • Wrapper for training
            • Checks that the data is consistent
            • Extract a random image
            • This function is used for preprocessing
            • Normalize the image
            • Check if a pixel is inside FOV
            • Given a segmentation and a seg
            • Get the mask for a segmentation
            • Generate an alung of a volume
            • Calculate the FOV
            • Gets the data for the given images
            • Extracts a 2d array of 2d arrays
            • Paint image border
            • Calculate the overlap between two images
            • Paint the border overlaps of the image
            • Extract the overlapping overlap between two images
            • The SEDU network
            • Squeeze a tensor
            • This function extracts the pred - only images that are inside FOV
            • Check if the image is inside the DRIVE mask
            • Compute the number of overlapping images
            • Extracts ground truth masks from images
            • BCDU network
            • This function is used to prepare the training image
            • Kill pixels inside image
            • Normalize the image
            Get all kandi verified functions for this library.

            BCDU-Net Key Features

            No Key Features are available at this moment for BCDU-Net.

            BCDU-Net Examples and Code Snippets

            No Code Snippets are available at this moment for BCDU-Net.

            Community Discussions

            QUESTION

            Python Numpy einsum klij->kijl and kijl->klij what do they mean?
            Asked 2020-Jan-20 at 11:08

            ANSWER

            Answered 2020-Jan-20 at 11:08

            The provided einsum statement is equivalent to (using np.moveaxis):

            Source https://stackoverflow.com/questions/59821308

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install BCDU-Net

            You can download it from GitHub.
            You can use BCDU-Net like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            gh repo clone rezazad68/BCDU-Net

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            git@github.com:rezazad68/BCDU-Net.git

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