pytorch_geometric | Graph Neural Network Library for PyTorch | Machine Learning library

 by   rusty1s Python Version: 1.7.2 License: MIT

kandi X-RAY | pytorch_geometric Summary

kandi X-RAY | pytorch_geometric Summary

pytorch_geometric is a Python library typically used in Artificial Intelligence, Machine Learning, Deep Learning, Pytorch applications. pytorch_geometric has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has medium support. You can install using 'pip install pytorch_geometric' or download it from GitHub, PyPI.

Documentation | Paper | Colab Notebooks | External Resources | OGB Examples. PyG (PyTorch Geometric) is a library built upon PyTorch to easily write and train Graph Neural Networks (GNNs) for a wide range of applications related to structured data.
Support
    Quality
      Security
        License
          Reuse

            kandi-support Support

              pytorch_geometric has a medium active ecosystem.
              It has 11858 star(s) with 2071 fork(s). There are 235 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 805 open issues and 1328 have been closed. On average issues are closed in 49 days. There are 27 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of pytorch_geometric is 1.7.2

            kandi-Quality Quality

              pytorch_geometric has 0 bugs and 0 code smells.

            kandi-Security Security

              pytorch_geometric has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              pytorch_geometric code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              pytorch_geometric is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              pytorch_geometric releases are available to install and integrate.
              Deployable package is available in PyPI.
              Build file is available. You can build the component from source.
              Installation instructions are not available. Examples and code snippets are available.
              pytorch_geometric saves you 11937 person hours of effort in developing the same functionality from scratch.
              It has 28635 lines of code, 2185 functions and 557 files.
              It has medium code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of pytorch_geometric
            Get all kandi verified functions for this library.

            pytorch_geometric Key Features

            No Key Features are available at this moment for pytorch_geometric.

            pytorch_geometric Examples and Code Snippets

            Quick Tour for New Users-Create your own GNN layer
            Pythondot img1Lines of Code : 24dot img1License : Permissive (MIT)
            copy iconCopy
            import torch
            from torch import Tensor
            from torch.nn import Sequential, Linear, ReLU
            from torch_geometric.nn import MessagePassing
            
            class EdgeConv(MessagePassing):
                def __init__(self, in_channels, out_channels):
                    super().__init__(aggr="max")  
            Quick Tour for New Users-Train your own GNN model
            Pythondot img2Lines of Code : 21dot img2License : Permissive (MIT)
            copy iconCopy
            import torch
            from torch import Tensor
            from torch_geometric.nn import GCNConv
            from torch_geometric.datasets import Planetoid
            
            dataset = Planetoid(root='.', name='Cora')
            
            class GCN(torch.nn.Module):
                def __init__(self, in_channels, hidden_channels,   
            Installation-Pip Wheels
            Pythondot img3Lines of Code : 6dot img3License : Permissive (MIT)
            copy iconCopy
            pip install pyg-lib torch-scatter torch-sparse -f https://data.pyg.org/whl/torch-1.13.0+${CUDA}.html
            pip install torch-geometric
            
            pip install torch-cluster torch-spline-conv -f https://data.pyg.org/whl/torch-1.13.0+${CUDA}.html
            
            pip install pyg-lib t  
            pytorch_geometric - randlanet segmentation
            Pythondot img4Lines of Code : 149dot img4License : Permissive (MIT License)
            copy iconCopy
            """
            An implementation of RandLA-Net based on the paper:
            RandLA-Net: Efficient Semantic Segmentation of Large-Scale Point Clouds
            Reference: https://arxiv.org/abs/1911.11236
            """
            import os.path as osp
            
            import torch
            import torch.nn.functional as F
            from r  
            pytorch_geometric - tgn
            Pythondot img5Lines of Code : 133dot img5License : Permissive (MIT License)
            copy iconCopy
            # This code achieves a performance of around 96.60%. However, it is not
            # directly comparable to the results reported by the TGN paper since a
            # slightly different evaluation setup is used here.
            # In particular, predictions in the same batch are made  
            pytorch_geometric - rgcn link pred
            Pythondot img6Lines of Code : 124dot img6License : Permissive (MIT License)
            copy iconCopy
            """"
            Implements the link prediction task on the FB15k237 datasets according to the
            `"Modeling Relational Data with Graph Convolutional Networks"
            `_ paper.
            
            Caution: This script is executed in a full-batch fashion, and therefore needs
            to run on CPU (f  
            PyTorch torch_sparse installation without CUDA
            Pythondot img7Lines of Code : 6dot img7License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            pip install --no-index torch-scatter -f https://pytorch-geometric.com/whl/torch-1.7.0+cpu.html
            pip install --no-index torch-sparse -f https://pytorch-geometric.com/whl/torch-1.7.0+cpu.html
            pip install --no-index torch-cluster -f https://py
            Pytorch: Node2Vec: TypeError: tuple indices must be integers or slices, not tuple
            Pythondot img8Lines of Code : 27dot img8License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            def pos_sample(self, batch):
                batch = batch.repeat(self.walks_per_node)
                rowptr, col, _ = self.adj.csr()
                rw = random_walk(rowptr, col, batch, self.walk_length, self.p, self.q)
                if not isinstance(rw, torch.Tensor):
                    rw =
            Changing a Dockerfile from CUDA9 to CUDA10
            Pythondot img9Lines of Code : 16dot img9License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            FROM nvidia/cuda:10.0-cudnn7-devel-ubuntu16.04
            
            RUN apt-get update && apt-get install -y --no-install-recommends \
                    apt-utils \
                    python3.6 \
                    python-dev \
                    python-pip \
                    python-setuptools \
                  

            Community Discussions

            QUESTION

            Pytorch Geometric Expected all tensors to be on the same device [demo code not working]
            Asked 2022-Jan-02 at 14:45

            I wanted to try out the link prediction functionality demonstrated here. Here are my versions:

            ...

            ANSWER

            Answered 2021-Dec-07 at 13:05

            The issue was indeed a bug. Thank you for reporting it.

            Source https://stackoverflow.com/questions/70205917

            QUESTION

            forward() not overridden in implementation of nn.Module in an example
            Asked 2021-Oct-27 at 14:36

            In this example, we see the following implementation of nn.Module:

            ...

            ANSWER

            Answered 2021-Oct-12 at 20:53

            This Net module is meant to be used via two separate interfaces encoder and decode, at least it seems so... Since it doesn't have a forward implementation, then yes it is improperly inheriting from nn.Module. However, the code is still "valid", and will run properly but may have some side effects if you are using forward hooks.

            The standard way of performing inference on a nn.Module is to call the object, i.e. calling the __call__ function. This __call__ function is implemented by the parent class nn.Module and will in turn do two things:

            • handle forward hooks before or after the inference call
            • call the forward function of the class.

            The __call__ function acts as a wrapper of forward. So for this reason the forward function is expected to be overridden by the user-defined nn.Module. The only caveat of violating this design pattern is that it will effectively ignore any hooks applied on the nn.Module.

            Source https://stackoverflow.com/questions/69546535

            QUESTION

            How GNN layers can know which graph in a batch has the given node & node feature?
            Asked 2021-Mar-02 at 03:18

            When we pass input as node features (x) and edge index (edge_index) to pytorch_geometric layer (e.g. GATConv), I am worried whether the layer can differentiate which batch sample the given node elements belong to.

            x follows the shape [num of nodes, feature size] and edge_index follows shape [2, num of edges]. However, these 2 do not have the given information to know which input graph of batch size 32 have given node feature in the x.

            Anyone can clarify on this ?

            ...

            ANSWER

            Answered 2021-Mar-02 at 03:18

            PyTorch-Geometric treats all the graphs in a batch as a single huge graph, with the individual graphs disconnected from each other. The node indices correspond to nodes in this big graph. This means there is no need for a batch dimension in x or edge_index.

            Source https://stackoverflow.com/questions/66423622

            QUESTION

            Why it does not run on Jupyter notebook while does work on command prompt?
            Asked 2020-Aug-23 at 15:05

            I am trying to run a python script, which is a neural net model.

            It runs when I'm trying to run it on command prompt like this below.

            (torch) hkimlx@DESKTOP-62RHFK2:~/GDL/pytorch_geometric/examples$ python gcn.py

            However, when I try to do it by copying the code onto Jupyter notebook, it gives me errors like this below.

            ...

            ANSWER

            Answered 2020-Aug-23 at 15:05

            I found the solution. The code included argparse.ArgumentParser that is not a good way for jupyter notebook to run a code.

            How to fix ipykernel_launcher.py: error: unrecognized arguments in jupyter?

            Source https://stackoverflow.com/questions/63543057

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install pytorch_geometric

            You can install using 'pip install pytorch_geometric' or download it from GitHub, PyPI.
            You can use pytorch_geometric like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries
            CLONE
          • HTTPS

            https://github.com/rusty1s/pytorch_geometric.git

          • CLI

            gh repo clone rusty1s/pytorch_geometric

          • sshUrl

            git@github.com:rusty1s/pytorch_geometric.git

          • Stay Updated

            Subscribe to our newsletter for trending solutions and developer bootcamps

            Agree to Sign up and Terms & Conditions

            Share this Page

            share link