muntjac | A web application GUI toolkit
kandi X-RAY | muntjac Summary
kandi X-RAY | muntjac Summary
A web application GUI toolkit
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Top functions reviewed by kandi - BETA
- Write a UIDL response .
- Get visible cells
- Writes a jupyter script to the application .
- Make the QWidget widget
- Returns the scattering data for a given series .
- Report errors .
- Replaces the field with the given values .
- Writes a general chart .
- Replaces an existing component
- Determines if parent is defined by parent .
muntjac Key Features
muntjac Examples and Code Snippets
Community Discussions
Trending Discussions on muntjac
QUESTION
I am trying to run a zero-inflated negative binomial GLMM with glmmTMB
; however I am getting NA
s in the z
and p
values of my model summary output. I am not sure what the cause is; I have followed the vignette and online help, but I think there must be an issue with my data and the technique I am trying to use.
My data is similar to the Salamanders
example used in the supporting documentation: a negative binomial distribution, zero inflated, with the same data structure.
Where is the issue? Is this data suitable for using family = nbinom2
?
data:
...ANSWER
Answered 2020-Jun-07 at 01:00The first clue is the warning
Model convergence problem; non-positive-definite Hessian matrix. See vignette('troubleshooting')
This means the model hasn't converged, or doesn't think it has, to a solution where the log-likelihood surface is downward-curved (i.e., a true maximum). That's why the standard errors can't be calculated (if you did the usual calculation they'd come out negative or complex). The log-likelihood could be calculated, but the model fit is suspect so glmmTMB returns NA
instead.
Next question: why? Sometimes this is mysterious and hard to diagnose, but in this case we have a good clue: when you see extreme parameter values (e.g. |beta|>10) in a (non-identity link) GLM, it almost always means that some form of complete separation is occurring. That is, there are some combinations of covariates (e.g. Keyword_1
==Lesser Mouse-deer
) where you always have zero counts. On the log scale, this means the density is infinitely lower than covariate combinations where you have a positive mean. The parameter is about -16, which corresponds to an expected multiplicative density difference of exp(-16) = 1e-07
. This isn't infinitesimal, but it's small enough that glmmTMB gets small enough differences in the log-likelihood that the optimizer stops. However, since the likelihood surface is almost flat, it can't compute curvature etc..
You could lump together or drop categories or do some form of regularization (e.g. see here or here ...); it might also make some sense to treat your Keyword_1
variable as a random effect, which would also have the effect of regularizing the estimates.
QUESTION
I have a data frame with which I am learning tidyverse
methods in R that looks like this:
ANSWER
Answered 2018-Jun-16 at 15:27I can help with a data.table
and ggplot2
solution:
First, you'll need to make your wide table a long one with melt
. Then, you're looking for position = "stack"
argument to geom_bar
:
Also, please notice that naming data
a table is bad idea, as there's a function called data()
.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
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Install muntjac
You can use muntjac like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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