syri | Synteny and Rearrangement Identifier

 by   schneebergerlab Python Version: v1.4 License: MIT

X-RayKey FeaturesCode SnippetsCommunity Discussions(2)VulnerabilitiesInstallSupport

kandi X-RAY | syri Summary

kandi X-RAY | syri Summary

syri is a Python library typically used in macOS applications. syri has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Synteny and Rearrangement Identifier
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              syri has a low active ecosystem.
              It has 75 star(s) with 18 fork(s). There are 4 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 9 open issues and 88 have been closed. On average issues are closed in 22 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of syri is v1.4

            kandi-Quality Quality

              syri has 0 bugs and 14 code smells.

            kandi-Security Security

              syri has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              syri code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              syri is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              syri releases are available to install and integrate.
              Build file is available. You can build the component from source.
              syri saves you 34 person hours of effort in developing the same functionality from scratch.
              It has 91 lines of code, 8 functions and 7 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed syri and discovered the below as its top functions. This is intended to give you an instant insight into syri implemented functionality, and help decide if they suit your requirements.
            • Wrapper for scaf
            • Remove multiple alignments
            • Extract reference data
            • Read a fasta file
            • Merge ranges
            • Compute the reverse transcription of a sequence
            • Run syri
            • Remove file or directory
            • Convert a sequence to its reverse representation
            Get all kandi verified functions for this library.

            syri Key Features

            No Key Features are available at this moment for syri.

            syri Examples and Code Snippets

            No Code Snippets are available at this moment for syri.

            Community Discussions

            Trending Discussions on syri

            How to provide a twisted reactor which is currently running?
            Replace element tag and reverse escape html entities

            QUESTION

            How to provide a twisted reactor which is currently running?
            Asked 2017-May-17 at 15:19

            We are trying to program a bot which claim to crawl articles from a newspaper thanks it's rss feeds. So we want that our script could repeat this steps several times per day:

            1) look at the rss feeds we have listed

            2) identify articles we haven't crawled yet

            3) add the links to a list of urls to crawl

            4) crawl the urls listed

            We achieve to execute these steps one time with this code:

            ...

            ANSWER

            Answered 2017-May-17 at 00:35

            Twisted's reactor is indeed unable to restart. If you think about it for a minute, you will realize that stopping an event loop, only to have another event start it back up, is counter intuitive. Most event driven apps are "long running" and should not stop unless something is severely wrong.

            Do not start-stop-restart event loops. Start the app and then never restart it (you're making a bot so I assume that the bot never sleeps). Use CrawlerRunner instead of CrawlerProcess then execute reactor.run(). This allows a bit more flexibility and allows you to run more tasks concurrently.

            Source https://stackoverflow.com/questions/43996730

            QUESTION

            Replace element tag and reverse escape html entities
            Asked 2017-Jan-12 at 10:43

            I have no control over the string source, I can only do html(), but I need to clean up the mess in the source,

            I want to delete all the

            but keep its content, and because the content also contains html tags which may not be fully completed like http://jsbin.com/vukogobuze/1/edit?html,js,console,output

            expected output

            ...

            ANSWER

            Answered 2017-Jan-12 at 10:01

            Iterate over the .pageWrap, generate a temporary element with HTML content as the text content and finally get the html content within .page and join them.

            Source https://stackoverflow.com/questions/41609242

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install syri

            You can download it from GitHub.
            You can use syri like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

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          • HTTPS

            https://github.com/schneebergerlab/syri.git

          • CLI

            gh repo clone schneebergerlab/syri

          • sshUrl

            git@github.com:schneebergerlab/syri.git

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