jackalope | source tool for enabling support

by sciforce Python Version: Current License: Apache-2.0

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | jackalope Summary

jackalope is a Python library. jackalope has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

You are looking at Jackalope, the open-source tool for enabling support for SNOMED CT-style post-coordinated expressions during ETL conversion of source EMR data into OMOP CDM format. Jackalope is developed and supported by Sciforce for the benefit of open science and the OHDSI community. Scroll to the bottom of the document for API reference.

Support

Quality

Security

License

Reuse

Support

jackalope has a low active ecosystem.

It has 1 star(s) with 1 fork(s). There are 4 watchers for this library.

It had no major release in the last 6 months.

jackalope has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of jackalope is current.

Quality

jackalope has no bugs reported.

Security

jackalope has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

jackalope is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

jackalope releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of jackalope

Get all kandi verified functions for this library.

jackalope Key Features

No Key Features are available at this moment for jackalope.

jackalope Examples and Code Snippets

No Code Snippets are available at this moment for jackalope.

Community Discussions

No Community Discussions are available at this moment for jackalope.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install jackalope

Jackalope is abstracted from backend database through SQLAlchemy library, allowing for easy integration with any SQL-compatible database. Currently, PostgreSQL and sqlite3 have been tested as backends, but no SQL code generated is platform-specific. To connect to a database, you need to create a configuration file connection_properties.json in JSON format. Use connection_properties.json.example as a template. WARNING: Jackalope will make changes to the database. Jackalope has also a fallback option to work directly with Athena downloaded CSV files. In this case, changes will be represented as _DELTA.csv files, which can be used to update the database manually.
Jackalope is a server architecture application, which can be run in a terminal or as a background process. It has a sepparate configuration file config.json in JSON format. It should be good enough in default state for the most usecases. on the first run, Jackalope will pickle SNOMED CT ontology file for faster loading.
host - port to run the server on. Default is localhost.
port - port to run the server on. Default is 52252.
snomed_path - relative or absolute path to the SNOMED CT US RF2 files. Default is snomed.
vocabs_path - relative or absolute path to the vocabulary files. Default is omop_vocab. Will only be used in csv backend.
backend - backend to use. Can be csv or sql. Default is sql.
pickle_ont - path where to store (and look for) the binary file of cached SNOMED Ontology.
connection_properties - path to the connection properties file. Default is connection_properties.json.
rebuild_omop - whether to reset all custom concepts in the OMOP CDM instance on connect. Default is false.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: