snp | official source code for Sequential Neural Processes | Recommender System library

by singhgautam Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | snp Summary

snp is a Python library typically used in Artificial Intelligence, Recommender System, Numpy applications. snp has no bugs, it has no vulnerabilities and it has low support. However snp build file is not available. You can download it from GitHub.

Sequential Neural Processes

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Security

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Support

snp has a low active ecosystem.

It has 29 star(s) with 6 fork(s). There are 3 watchers for this library.

It had no major release in the last 6 months.

snp has no issues reported. There are 10 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of snp is current.

Quality

snp has 0 bugs and 0 code smells.

Security

snp has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

snp code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

snp does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

snp releases are not available. You will need to build from source code and install.

snp has no build file. You will be need to create the build yourself to build the component from source.

snp saves you 1751 person hours of effort in developing the same functionality from scratch.

It has 3876 lines of code, 161 functions and 28 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed snp and discovered the below as its top functions. This is intended to give you an instant insight into snp implemented functionality, and help decide if they suit your requirements.

Train the model .
Configure the argument parser .
Generate random temporal series .
Get a scene dataset .
Process a single component .
Generate random image shapes .
Plot all functions in 1d .
Evaluate the model .
Collects the output of each device .
Construct a tensorgrid that truncates input image

Get all kandi verified functions for this library.

snp Key Features

No Key Features are available at this moment for snp.

snp Examples and Code Snippets

No Code Snippets are available at this moment for snp.

Community Discussions

Trending Discussions on snp

Python pandas - grouping and plotting

pandas groupby().size(), to excel line graph

Extracting column names (samples) contaning text from another column

Split one column into two, retain original value if there aren't two values

Extracting rows from file based on another file using awk

Replace 2nd and 3rd occurrence of a character with another character, for each line, Bash

Grep columns by values in different dataframe in python

Break a small sentence in multiple rows with a single string each in R dplyr

Swift: Bring custom alert view over nav bar

Change ID string in vcf file with awk

QUESTION

Python pandas - grouping and plotting

Asked 2022-Apr-17 at 01:15

In df1 I have columns for Line, Generation, ID, and Sex.

I want to count matching occurrences in df2 of the remaining columns for each row.

The desired result would look like:

Line A, Generation 2020A, has a total of 1 row for row ['A','A','A','A'] in df2.
Line B, Generation 2020B, has a total of 2 rows for row ['A','C','T','G'] in df2.

df1

Line ID Sex Generation SNP-1 SNP-2 SNP-3 SNP-4 A 1 F 2020A A A A A B 2 F 2020B A C T G B 3 F 2020B A C T G

df2

SNP-1 SNP-2 SNP-3 SNP-4 A A A A A C T G ...

ANSWER

Answered 2022-Apr-16 at 05:14

You can use merge and then do value_counts to achieve this.

Source https://stackoverflow.com/questions/71891011

QUESTION

pandas groupby().size(), to excel line graph

Asked 2022-Apr-14 at 19:10

random_df

...

ANSWER

Answered 2022-Apr-14 at 19:10

IIUC, you can use seaborn.lineplot:

Source https://stackoverflow.com/questions/71876122

QUESTION

Extracting column names (samples) contaning text from another column

Asked 2022-Mar-20 at 20:10

I want to extract only those Samples which contains alleles2 of SNP1 to 9 and want to put them in a table side by side in a way that I can distinguish which SNP corresponds to which Samples.

My data looks like this:

...

ANSWER

Answered 2022-Mar-20 at 20:10

You can use data.table to melt the data into long format, and identify which Samples have allele2 for each SNP:

Source https://stackoverflow.com/questions/70099843

QUESTION

Split one column into two, retain original value if there aren't two values

Asked 2022-Mar-17 at 18:26

I have a column with specific gene locations in my data frame. It either has the single location (in case of a SNP) or it has a range for the locations (in case of Deletion, Duplication).

I want to split the Gene_Locations column into two columns: Start_Position, Stop Position. Where it has a range, this is easy enough to do. But where there is only one value, I want it to retain the original value in the Gene_Location column, in both the Start_position and Stop_position columns. The second bit has not been easy to do as it it keeps coming up with NA, or a blank whitespace. I'd be grateful for help with this.

This is my expected column:

GeneLocation Start_Position Stop_Position 123456 123456 123456 123456 - 123457 123456 123457 122345 - 122346 122345 122346 134567 134567 134567 123456 123456 123456

This is my actual column:

GeneLocation Start_Position Stop_Position 123456 123456 NA 123456 - 123457 123456 123457 122345 - 122346 122345 122346 134567 134567 NA 123456 123456 NA ...

ANSWER

Answered 2022-Mar-17 at 17:02

coalesce is perfect for this use case! Here is solution with an ifelse statement.

Source https://stackoverflow.com/questions/71515808

QUESTION

Extracting rows from file based on another file using awk

Asked 2022-Feb-08 at 21:44

I have two files.

File 1:

...

ANSWER

Answered 2022-Feb-06 at 16:47

You may use this awk:

Source https://stackoverflow.com/questions/71009277

QUESTION

Replace 2nd and 3rd occurrence of a character with another character, for each line, Bash

Asked 2022-Feb-03 at 04:28

I am trying to reformat the reference legend files to make them compatible with bcftools.

Essentially, I need to go from this:

...

ANSWER

Answered 2022-Feb-03 at 04:28

If sed is an option:

Source https://stackoverflow.com/questions/70965847

QUESTION

Grep columns by values in different dataframe in python

Asked 2022-Feb-03 at 00:19

I have this df1:

...

ANSWER

Answered 2022-Feb-03 at 00:15

You can first right merge on "SNP", then use np.where to evaluate the condition. Then fill NaN values with the corresponding values. Finally drop the columns with missing values and rearrange to fit the desired outcome:

Source https://stackoverflow.com/questions/70964382

QUESTION

Break a small sentence in multiple rows with a single string each in R dplyr

Asked 2022-Feb-02 at 11:25

I have a data frame that looks like this

...

ANSWER

Answered 2022-Feb-02 at 11:10

You can do:

Source https://stackoverflow.com/questions/70954423

QUESTION

Swift: Bring custom alert view over nav bar

Asked 2022-Jan-17 at 11:06

I use UIView as alert view in my app, and i want to show it as banner on top of screen, when device is not connected to internet. So my issue that this view appears under my nav bar, how can i bring it to front ? I've tried to us UIApplication.shared.keyWindow! and add my backgroundView as subview to it, but it causes other issues.

This is my alert view class: I'll provide all class, but my realisation is in show() method.

...

ANSWER

Answered 2022-Jan-17 at 11:06

Since you have a navigation controller and do not wish to add this view to the window directly, I can offer the following idea which could work.

Your UIViewController is contained with the UINavigationController so if you add the alert to your UIViewController, you will notice it below the UINavigationBar.

You could instead show the alert from your UINavigationController instead with the following changes.

In the func show(viewController: UIViewController) in your class ConnectionAlertView: UIView I changed the following line:

Source https://stackoverflow.com/questions/70712790

QUESTION

Change ID string in vcf file with awk

Asked 2022-Jan-10 at 17:22

I have a VCF file with SNP IDs like this:

...

ANSWER

Answered 2022-Jan-10 at 13:39

Here, * is used as a quantifier, not as any text pattern.

You can use .* to match any text between AX and rightmost _rs (since it is the only _rs in your contents, it is fine to use):

Source https://stackoverflow.com/questions/70653236

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install snp

You can download it from GitHub.
You can use snp like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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