encore | Encore Analysis Server | Data Visualization library

 by   statgen Python Version: Current License: AGPL-3.0

kandi X-RAY | encore Summary

kandi X-RAY | encore Summary

encore is a Python library typically used in Healthcare, Pharma, Life Sciences, Analytics, Data Visualization applications. encore has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Encore allows scientists to test hypotheses using large scale sequencing data while hiding many of the complicated technical issues associated with working on terabyte scale data. In addition to performing the most common association tests for single variants and groups of rare variants, Encore enables users to annotate, share and interact with results. Access to Encore is controlled by a white list of users who can upload phenotypes and request analyses. All per-variant and per-gene summary statistics are returned. To maintain confidentiality of research participant data, individual level data cannot be downloaded. By optimizing the most common analyses and providing rich ways to interact with results, Encore offers an exciting platform to investigate genetic hypotheses.
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            kandi-support Support

              encore has a low active ecosystem.
              It has 10 star(s) with 5 fork(s). There are 12 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 0 open issues and 1 have been closed. On average issues are closed in 1 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of encore is current.

            kandi-Quality Quality

              encore has no bugs reported.

            kandi-Security Security

              encore has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              encore is licensed under the AGPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              encore releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              Installation instructions are not available. Examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed encore and discovered the below as its top functions. This is intended to give you an instant insight into encore implemented functionality, and help decide if they suit your requirements.
            • Create a new job
            • Calculate the hash of a job definition
            • Get a mysql db connection
            • Create a new job
            • Get zoom information from a job
            • Returns the output primary file
            • Returns the absolute path to the output file
            • Get output files
            • Load user from the Authorization header
            • Resubmits a job
            • Return a dict representation of the phenotype
            • Cancel a job
            • Insert item into the list
            • Try to scrape the failure reason
            • Updates a phenotype column
            • Send feedback
            • Render a single job
            • Return a dict representation of the Job
            • Retrieve a variant variant
            • Validate model specification
            • Make the closest gene BED in the given events
            • Generate a new pheno
            • Create a Flask app
            • Get the collaborators
            • Merge the covariance of the phenoreader
            • Process the results from a file
            Get all kandi verified functions for this library.

            encore Key Features

            No Key Features are available at this moment for encore.

            encore Examples and Code Snippets

            No Code Snippets are available at this moment for encore.

            Community Discussions

            QUESTION

            Symfony 5 : Install Bootstrap SB Admin 2 and run with Webpack Encore
            Asked 2021-Jun-06 at 09:36

            Into front office I can use Bootstrap with usually installation on SF5, but into back office i want to use SB Admin 2.

            I can install it with npm or yarn, sources are in node_modules, but when I write require('startbootstrap-sb-admin-2'); into back_app.js and when I run yarn encore dev I have this error message :

            ...

            ANSWER

            Answered 2021-Jun-06 at 09:36

            this could be useful :

            Source https://stackoverflow.com/questions/67333126

            QUESTION

            Issues trying to install sylius/product-bundle to my Symfony 5.3 project with composer
            Asked 2021-Jun-03 at 16:19

            I am trying to develop a project and I'm having trouble installing a Sylius with composer.

            Here is my composer.json

            ...

            ANSWER

            Answered 2021-Jun-03 at 16:19

            You have two problems:

            • You have Symfony '5.3' installed, which was released just one day ago.
            • You are using PHP 8, which is not supported by Sylius. By using PHP 8, you end up installing versions of dependencies that are not compatible with Sylius.

            Since the current version of Sylius supports up to 5.2, and PHP ^7.3, you'll have to either downgrade to Sf 5.2 and PHP >= 7.3 && PHP < 8, or wait a some time so support for Sf 5.3 and PHP >= 8 is baked in.

            I would recommend using the standard Sylius installation, but trying to install Sylius with the recommended docs way (composer create-project sylius/sylius-standard acme) when using PHP 8 also fails. But downgrading to PHP 7.4 and running the create-project command does work.

            The project seems to have entered the dependency hell stage of development.

            Source https://stackoverflow.com/questions/67822865

            QUESTION

            Webpack 5 (Webpack Encore): How to run multiple webpack instances on the same page and avoid any conflicts?
            Asked 2021-May-14 at 22:59

            For a pretty large Web application I want to run multiple instances of Webpack (Encore) on the same page. When I put all the source code into a single Webpack configuration it all works. However when I have two different configurations with the same source code I always get errors like this:

            ...

            ANSWER

            Answered 2021-May-14 at 22:59

            Finally I solved it by adding the following setting to the configuration:

            Source https://stackoverflow.com/questions/67541708

            QUESTION

            Stuck on stdin reading until ^C or EOF, then "stdin spam"
            Asked 2021-May-14 at 12:12

            Hello to any competent people out there who would stumble upon my post.
            I require assistance like never before.

            My problem is here:

            ...

            ANSWER

            Answered 2021-May-14 at 12:12

            I just figured it out myself:

            dup2() creates a duplicate of the connection's file descriptor into STDIN_FILENO, leaving it open only in stdin after close(), thus reading stdin with getch, getchar or any other functions was basically waiting for the client to send something.

            Removing both solved my problem: getch() now works properly.

            Source https://stackoverflow.com/questions/67491560

            QUESTION

            Why does findViewById() returns "null"?
            Asked 2021-May-09 at 18:10

            I have an important issue with java
            I have this code :

            ...

            ANSWER

            Answered 2021-May-06 at 19:37

            Your tab_connect etc. are included in fragment_main layout and not in activity_main layout that is inflated when you call findViewById() for those ids. The code you posted does not show where you're using fragment_main but what is certain is that it is not in your activity's view hierarchy at the time when you try to look up those views.

            Either move the findViewById() calls and whatever you're doing with the views to the fragment, or move the views from the fragment to your main activity.

            Source https://stackoverflow.com/questions/67423519

            QUESTION

            Command "encore" not found when trying yarn encore dev command
            Asked 2021-May-09 at 09:47

            I am currently stuck at the Encore/Webpack installation. I followed the steps at symfony.com. But when continuing to the simple example I got stuck at running yarn encore dev. I get the error: "Command "encore" not found". I also have an error when running symfony server:start after installing Encore and navigating to a view:

            An exception has been thrown during the rendering of a template ("Could not find the entrypoints file from Webpack: the file "path/entrypoints.json" does not exist.").

            As far as I know the entrypoints.json should have been autogenerated. I have Yarn 1.22.10 and NodeJS 14.16.1.

            What I have done

            I executed the commands composer require symfony/webpack-encore-bundle and yarn install

            1. I looked at StackOveflow questions 'error Command "encore" not found.' when running 'yarn run encore' in Symfony4, webpack encore dev-server not found /, Error Command "encore" not found. (separate backend webpack), Can't run encore dev
            2. I executed the command composer require webpack
            3. I noticed my package.json doesn't have a scripts object where the command encore dev is supposed to be living. I watched a YouTube video and followed it (https://youtu.be/Fs_4FMoSO90). That's why I know this. I wonder why I don't have it. Below is the package.json from the video. My package.json only has the dev dependency Bootstrap.
            4. Executed npm install

            Package.json from video:

            ...

            ANSWER

            Answered 2021-May-09 at 09:47

            Your advice worked msg. I installed the recipes with composer recipes:install symfony/webpack-encore-bundle --force -v and now yarn encore dev compiles webpack successfully. I now also know that I accidentally kept the package.json from the video in my project which explains why my error changed from Command encore not found to Error: Encore.enableStimulusBridge is not a recognized property or method. webpack.config.js:26 Object.

            Source https://stackoverflow.com/questions/67448689

            QUESTION

            Datatables.net (1.10.22) + Webpack Encore (1.11) + Symfony (5.2.6)
            Asked 2021-Apr-19 at 10:09

            I am working on a Symfony 5.2.6 project and I am trying to use datatables.net library in my project, but can't find a way to import it properly.

            I am using a lot of js/jquery libraries and everything is working well except datatables. (I am using Metronic admin template)

            This is my webpack.config.js :

            ...

            ANSWER

            Answered 2021-Apr-13 at 13:55

            Remove

            window.jQuery = window.$ = require('jquery');

            Then, you can import datatable this way:

            Source https://stackoverflow.com/questions/67069739

            QUESTION

            How to resolve the Composer dependencies conflicts (a clean way)?
            Asked 2021-Apr-16 at 15:23

            I'm writing a PHP application based on Symfony v5.0.11. Now I want to upgrade Symfony to the ^v5.2. (The Composer version is 2.0.12.)

            ...

            ANSWER

            Answered 2021-Apr-16 at 07:58

            Considering your output:

            Restricting packages listed in "symfony/symfony" to "5.0.*"

            You currently have something like this in your composer.json:

            Source https://stackoverflow.com/questions/67120565

            QUESTION

            JQuery loading after my script inside Twig template
            Asked 2021-Apr-16 at 09:39

            I have some Javascript code inside a Twig template that uses jQuery. The script seems to be loading before jQuery, so it throws a $ is not defined error. I can't figure out why it's loading before the main bundle that includes jQuery (compiled with webpack-encore).

            JQuery does load because I can reference it from the console or wrap the script inside a setTimeout to force it to be loaded later.

            I have this base template:

            ...

            ANSWER

            Answered 2021-Apr-16 at 05:26

            NOTE: You must note that you can’t use require and import at the same time in your node program and it is more preferred to use require instead of import as you are required to use the experimental module flag feature to run import program.

            --https://www.geeksforgeeks.org/difference-between-node-js-require-and-es6-import-and-export/

            The article above also mentions that with require "you can directly run the code" in this case the code is defining the $ function, so you want to run that.

            My projects are as follows with no problems:

            app.js:

            Source https://stackoverflow.com/questions/67117036

            QUESTION

            How to fix "This dependency was not found" when importing js file?
            Asked 2021-Apr-10 at 05:50

            assets/admin/js/components/formatter.js

            ...

            ANSWER

            Answered 2021-Mar-05 at 11:38

            Turns out I needed to import this way:

            Source https://stackoverflow.com/questions/66491700

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install encore

            You can download it from GitHub.
            You can use encore like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

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            CLONE
          • HTTPS

            https://github.com/statgen/encore.git

          • CLI

            gh repo clone statgen/encore

          • sshUrl

            git@github.com:statgen/encore.git

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