salmon | A tool to collect triplet queries
kandi X-RAY | salmon Summary
kandi X-RAY | salmon Summary
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Top functions reviewed by kandi - BETA
- Run the algorithm
- Calculate the distance between head and head
- Compute the distances between a matrix
- Clear the cache
- Returns a dict containing the command - line options
- Creates a ConfigParser from root
- Return the project root directory
- Extract the version information from the VCS
- Returns a JSON response
- Get plot of endpoint time plots
- Get a list of search results
- Process an answer
- Scans the setup py file and checks if it is missing
- Get the query for a sampler
- Creates a new user account
- Get a logger
- Return a pandas DataFrame with the top scores
- Get a random query
- Render a query page
- Show embedding
- Calculate the response rates
- Get a pandas dataframe of models
- Return a pandas dataframe
- Create the versioneer config file
- Post queries
- Process the form
salmon Key Features
salmon Examples and Code Snippets
Community Discussions
Trending Discussions on salmon
QUESTION
Like
make
,
scons
has a large number of predefined variables and rules. (Try scons | wc
on an SConstruct
containing env = Environment(); print(env.Dump())
to see how extended the set is.)
But suppose we aren't after the wizardry of presets but rather want to do something a lot more primitive—simulating launching a few instructions from the (bash, etc) command line?
Also suppose we're quite happy with the default Decider('MD5')
. What is the translation of the one-souce-one-target:
ANSWER
Answered 2021-Jun-14 at 17:43All the answers you're looking for are in the users guide (and manpage)
Firstly, assuming you don't want to scan the input files to add included files specified in the input files, you can use Commmand()
(See info here: https://scons.org/doc/production/HTML/scons-user.html#chap-builders-commands)
Then you'll want an alias to specify an a non file command line target (See here:https://scons.org/doc/production/HTML/scons-user.html#chap-alias)
Putting those two together yields
QUESTION
I am trying to process bulk RNA-seq data using salmon through snakemake in the conda/mamba environment.
I am receiving the following error when running snakemake:
...ANSWER
Answered 2021-Jun-10 at 20:38I think the Snakefile is ok, SRR3350597_GSM2112330_RA_hip_3_Homo_sapiens_RNA-Seq_1.fastq.gz
is simply missing. See the ls
output of yours, that file is not in it.
QUESTION
I want a div to have the min-height of the viewport. Therefor I use Javascript to detect the window height and set a style property (because of mobile browser height behavior). https://css-tricks.com/the-trick-to-viewport-units-on-mobile/
I want to resize the height in case of orientationchange or if the browser window changes. So, I created a resize event.
And here is my problem - the resize event also gets fired when you scroll the page. So there is this ugly jump in the content on scrolling down.
Does anyone have a solution for this problem?! It bothers me so often :(
Edit - here is a simple example:
...ANSWER
Answered 2021-Jun-02 at 14:07It is not that a resize event is being called on every scroll, but there is actually a resize on the user scrolling at first on some mobiles, or subsequently when they go back to the first page top - it's the tabs at the top of the browser window that come and go - the reason 100vh doesn't 'work' as one would expect. This was done in the mobile browsers to stop a jump effect when doing 'ordinary' scrolling, but of course in this case the layout is altered depending on actual screen size usable.
One slight mitigation is to make the height change transition so it's less of a jerky experience. It's still feeling a bit different from a normal scroll without height change, but is less of an annoyance I think.
(Note, the phenomenon isn't seen on an SO snippet, run this code in your browser on an actual device).
QUESTION
The object within an object contains variables such as "name", "amount", "amountType", and "cal". The strings on those variables should be transferred through loop as several row in the given HTML table. Each variable should be on its own cell.
I already made one row and made 4 cell for the name, amount, amount type, and calorie columns. Then, I tried to transfer the objects elements inside the cell using the index of the object.
...ANSWER
Answered 2021-May-31 at 07:11You're treating the mealObj
as an array
while it's an object
and also you're not looping, so your code only runs once.
Below you can find a code that works for the first Menu (Steak). You might need to account for multiple meals by creating multiple tables.
QUESTION
On the function "createIngrList", it should take all the ingredient names, such as "Butter", "Beef", "Onion", etc., and turn it into buttons. So each button should have a text with the name of an ingredient written on it. As of now, there is just 4 buttons with "undefined" written on it. If possible, all the repeating ingredients such as "Onion" should not be made into button twice. Once is enough.
...ANSWER
Answered 2021-May-31 at 00:33I think this may be what you are looking for... Though you mention not parsing ingredients that are listed twice, though each food, only has an ingredient listed in your object once. Correct me if I am wrong I will refine answer.
You can use for/in loops to get the nested ingredients and their foods. Then use the obj.name
to get the name. Through the first for/in loop the key -> i
will be the name of the food, then use the second key along witht he first to get the actual .name
=> obj[i][k].name
this will give you the ingredient name.
I also created a couple of divs to palce the food and its buttons wrapped in divs for styling, etc...
You can use conditionals to filter by food if you want to only show a certain type of foods ingredients as buttons.
NOTE: your obj key for the first value is uppercase, this will cause issues when parsing obj[index][key].name
, likely that is just a typo...
QUESTION
By array intersection I mean, the inventory has a lot more elements than each document ingredients array, and the result I want to get from the query is all documents which all array elements are contained within the inventory. $all will get me zero results since the inventory has more elements than can be found in ingredients even if all ingredients are found within the inventory,
I have thousands of docs that have an array field of strings
...ANSWER
Answered 2021-May-29 at 06:48You can try aggregation operator in mquery using $expr
expression condition,
- first of all you can join the array of string by
|
order symbol and make a string, and use it in$regex
search, $filter
to iterate loop ofingredients
$regexMatch
to match element has any matching word$size
to get the total size of filtered elements$eq
to match filtered result and actualingredients
is equal
QUESTION
The xml format is a good way to store any hierarchical data. As an example we are using the classification of animals
...ANSWER
Answered 2021-May-28 at 10:32What we can see in the html table, is that the first row holds a cell for every hierarchy level which is represented as a column. This means it has to be generated a row with all elements from the highest till the deepest hierarchy level. The element on the deepest hierarchy level is the one without further descendants. To get these we can use this xpath expression
QUESTION
I'm trying to create a table automatically using Angular and HTML. I take data from a mysql database using PHP, and Angular can see them thanks to JSON.
In admin.component.html file I create the table using *ngFor in this way:
...ANSWER
Answered 2021-May-28 at 09:59Since *ngFor
is placed on the td
tag it ends up creating multiple td
tags, one for each element within element.Ingredienti
and element.Allergeni
. What you want is to display the whole element.Ingredienti
array within a single td
. So generating some other tag within a single td
is the way to go.
Something like this should solve your issue
QUESTION
I've been trying to set up my nav-bar for mobile devices but the navigation bar doesn't seem to act accordingly to the @media queries provided.
...ANSWER
Answered 2021-May-26 at 19:23It's not a great practice to define widths in conjunction with flex-box
. The problem is that it fights with flex box's ability to manage the space.
Instead, you should use flex-basis
or the flex
(flex-grow, flex-shrink, flex-basis) shorthand to define sizing.
So in your case use
QUESTION
I have a div that contains an iframe
element that shows a video (song), and another div that shows the lyrics of that song. the div that shows the lyrics is set with display: none;
. now, i want to show this div (lyrics) when the div that contains the iframe
element with the video is hovered. (I'm not allowed to use Javascript, only CSS).
What i have:
karaoke.html:
...ANSWER
Answered 2021-May-25 at 15:10Instead of using .karaoke:hover .lyrics-w { display: block; }
use this
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Install salmon
You can use salmon like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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