pygenomics | A library for next generation genomics in Python

by tiagoantao Python Version: 0.1.5 License: AGPL-3.0

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | pygenomics Summary

pygenomics is a Python library. pygenomics has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can install using 'pip install pygenomics' or download it from GitLab, GitHub, PyPI.

A library for next generation genomics in Python 3

Support

Quality

Security

License

Reuse

Support

pygenomics has a low active ecosystem.

It has 17 star(s) with 3 fork(s). There are 3 watchers for this library.

It had no major release in the last 12 months.

There are 1 open issues and 0 have been closed. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of pygenomics is 0.1.5

Quality

pygenomics has 0 bugs and 0 code smells.

Security

pygenomics has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

pygenomics code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

pygenomics is licensed under the AGPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

pygenomics releases are not available. You will need to build from source code and install.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

It has 1976 lines of code, 127 functions and 31 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed pygenomics and discovered the below as its top functions. This is intended to give you an instant insight into pygenomics implemented functionality, and help decide if they suit your requirements.

Renders an indented pca plot
Get matplotlib figure
Render a pca plot
An admix plot
Convert genotypes to smartpca
Read a record from a file
Parse indiv name from a marker line
Cluster components
Get a cluster of components
Submit a command
Cleans up running jobs
Wait for all tasks to complete
Plot a stacked plot
Commit changes to the database
Calculate the bburrows of a list of indices
Submit a command to the server
Parse the file into a Record object
Wait for all tasks to finish
Load config file
Convert a phylogenetic tree to networkx
Parse hwe file
Calculate the distance between two sequences
Run smartpca
Get all the values of the node
Remove sex chromosomes from a genome
Assign value to given position

Get all kandi verified functions for this library.

pygenomics Key Features

No Key Features are available at this moment for pygenomics.

pygenomics Examples and Code Snippets

No Code Snippets are available at this moment for pygenomics.

Community Discussions

No Community Discussions are available at this moment for pygenomics.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pygenomics

You can install using 'pip install pygenomics' or download it from GitLab, GitHub, PyPI.
You can use pygenomics like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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