pyslim | Tools for dealing with tree sequences

by tskit-dev Python Version: 1.0b1 License: MIT

X-Ray Key Features Code Snippets(1)Community Discussions Vulnerabilities Install Support

kandi X-RAY | pyslim Summary

pyslim is a Python library. pyslim has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install pyslim' or download it from GitHub, PyPI.

pyslim is a python module to allow reading and writing of SLiM-produced tree sequences as a thin interface to tskit. Please see our documentation for more information. (That link is to documentation for the last release release; instead, the latest documentation may have additional examples, but may also describe features you need to install from github to get.).

Support

Quality

Security

License

Reuse

Support

pyslim has a low active ecosystem.

It has 14 star(s) with 14 fork(s). There are 6 watchers for this library.

It had no major release in the last 12 months.

There are 47 open issues and 67 have been closed. On average issues are closed in 132 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of pyslim is 1.0b1

Quality

pyslim has no bugs reported.

Security

pyslim has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

pyslim is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

pyslim releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed pyslim and discovered the below as its top functions. This is intended to give you an instant insight into pyslim implemented functionality, and help decide if they suit your requirements.

Calculate population size
Calculate the average time alive
Return the number of individual age
Checks if locations are within the given locations
Update the tables in the database
Updates the table metadata
Return the metadata for the old metadata schema
Given a provenance record extract its version and file version
Return a tree sequence of tables annotated with metadata
Return default metadata for a particular slim file
Annotate a set of populations
Annotate individual individuals
Returns True if there is multiple parents
Return unique labels for group
Compute the parents of individual parents
Return the age of the given time
Return list of individuals that are alive at given time
Make a pyslim metadata document
Return the environment
Recompulate a simulated time series
Checks if the given tree sequence is in the current SLIM format
Find the nucleotide at the given position
Return the mutation at a given position
Return a list of individual parents
Calculate the time of a simulation time

Get all kandi verified functions for this library.

pyslim Key Features

No Key Features are available at this moment for pyslim.

pyslim Examples and Code Snippets

pySLiM,Installation

Python

Lines of Code : 1

License : Permissive (MIT)

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pip install pyslim

Community Discussions

No Community Discussions are available at this moment for pyslim.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pyslim

To install pyslim, do. or read the documentation for how to install from source.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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