MAST | MAterials Simulation Toolkit for use with pymatgen

 by   uw-cmg Python Version: v-2.0.1 License: No License

kandi X-RAY | MAST Summary

kandi X-RAY | MAST Summary

MAST is a Python library typically used in Simulation applications. MAST has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

Please see the documentation in MAST/doc/build/html or on
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            kandi-support Support

              MAST has a low active ecosystem.
              It has 14 star(s) with 7 fork(s). There are 12 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 83 open issues and 388 have been closed. On average issues are closed in 466 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of MAST is v-2.0.1

            kandi-Quality Quality

              MAST has 0 bugs and 0 code smells.

            kandi-Security Security

              MAST has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              MAST code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              MAST does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              MAST releases are available to install and integrate.
              Build file is available. You can build the component from source.
              MAST saves you 265905 person hours of effort in developing the same functionality from scratch.
              It has 258573 lines of code, 1855 functions and 958 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed MAST and discovered the below as its top functions. This is intended to give you an instant insight into MAST implemented functionality, and help decide if they suit your requirements.
            • Generate a box randomly from individual individuals
            • Write the XYZ to a file object
            • Write the final structure to a file
            • Generate the diagonal of a solid solid solid
            • Generates a pop box for a list of atoms
            • Generate a pop sphere
            • Parse an individual file
            • Duplicate an individual
            • Calculate stem using stem_add method
            • Checks if a cell pixel is on the plane
            • Perform a swap operation
            • Aligns a lattice group
            • Creates the structure window
            • Parse a MAST recipe
            • Performs Basin Hopping on an index
            • Rotate group of atoms
            • Finds a random replacement for a given indices
            • Calculate the stem shift
            • Writes the parameters to the optimizer
            • Removes stem from an index
            • Parse a structure section
            • Calculate the centroid of a bulk solid
            • Read Ltraj file
            • Parse ingredients section section
            • Mutate cell shape
            • Function to find the best individuals in a population
            Get all kandi verified functions for this library.

            MAST Key Features

            No Key Features are available at this moment for MAST.

            MAST Examples and Code Snippets

            No Code Snippets are available at this moment for MAST.

            Community Discussions

            QUESTION

            The data couldn’t be read in Swift
            Asked 2022-Feb-04 at 04:49

            I am new to swift . I am trying to retrieve the data form api. The data in json format. Here is the data in json format.

            ...

            ANSWER

            Answered 2022-Feb-04 at 04:49

            try using this example code to decode your json data: (note I do not have a api_key, so I cannot test this).

            EDIT-1:

            here is the code I used for testing (sorry it is using SwiftUI), from this you should be able to get your data decoded. Works for me.

            Source https://stackoverflow.com/questions/70980683

            QUESTION

            Tensorflow: Is it normal that my GPU is using all its Memory but is not under full load?
            Asked 2022-Jan-20 at 08:14

            I am currently trying to run a text-based sequence to sequence model using tensorflow 2.6 and CuDNN.

            The code is running, but taking suspiciously long. When I check my Task Manager, I see the following:

            This looks weird to me, because all memory is taking but it's not under heavy load. Is this expected behaviour?

            System:

            • Windows 10
            • Python 3.9.9
            • Tensorflow & Keras 2.6
            • CUDA 11.6
            • CuDNN 8.3
            • NVidia RTX 3080ti

            In the code I found the following settings for the GPU

            ...

            ANSWER

            Answered 2022-Jan-20 at 08:14
            Yes this behaviour is normal for TensorFlow!

            From the TensorFlow docs

            By default, TensorFlow maps nearly all of the GPU memory of all GPUs (subject to CUDA_VISIBLE_DEVICES) visible to the process. This is done to more efficiently use the relatively precious GPU memory resources on the devices by reducing memory fragmentation. To limit TensorFlow to a specific set of GPUs, use the tf.config.set_visible_devices method.

            If you don't want TensorFlow to allocate the totality of your VRAM, you can either set a hard limit on how much memory to use or tell TensorFlow to only allocate as much memory as needed.

            To set a hard limit

            Configure a virtual GPU device as follows:

            Source https://stackoverflow.com/questions/70782399

            QUESTION

            javascript Promise not wait Promise.all
            Asked 2022-Jan-10 at 18:42

            So getAstronautsData make request to API then return array of promises. This promises mast make request to Wiki API and parse response in object. Then exampleAsyncFunc must wait all promises and return one big object with all info about Astronauts. But if I use Promise.all function ending and console is clear.

            ...

            ANSWER

            Answered 2022-Jan-09 at 20:38

            You appear to be using Promise.all correctly, but if any of the Promises in Promise.all rejects, then overall Promise.all promise will reject too and nothing will happen, where in your forEach version it'll simply skip those promises silently and move on to the next entries.

            Likewise if any of the promises in the list stays pending: if so then the Promise.all promise will never resolve. This could be because you have a long list of return values and the whole list takes a longer-than-expected time to resolve, or because your getWikiData call encounters an error and you don't pass that out to reject that particular promise in your array.

            You can debug this behavior by ensuring that each of your calls to then is followed by .catch(console.error) (or some more robust error handler).

            Source https://stackoverflow.com/questions/70645028

            QUESTION

            Varnish 503 Backend Fetch failed
            Asked 2022-Jan-07 at 13:34

            I have a server running Ubuntu 20.04, nginx and varnish with letsencrypt SSL.

            I have installed PHPMyAdmin to the default server block and have another server block for my actual website running magento 2.4.3. This was all working fine until i installed varnish and now when trying to load either site i get the 503 Backend fetch failed error and when i try and load then on port 8080 from the URL i get a "this page cannot be reach" error.

            I have configured nginx to listen on port 8080 for both sites, i have set varnish to listen on port 80. I have edited the vcl generated by magento to set the host and port to 127.0.0.1 and 8080 respectively as shown on https://devdocs.magento.com/guides/v2.4/config-guide/varnish/config-varnish-configure.html.

            The varnishlog show the backend is unhealthy error but i dont know how to solve this.
            The output of netstat -tulpn is:

            ...

            ANSWER

            Answered 2022-Jan-07 at 08:35

            Try to increase first_byte_timeout parameter like this:

            Source https://stackoverflow.com/questions/70608310

            QUESTION

            how would I convert CSV obtained from tab separated file into pandas dataframe
            Asked 2022-Jan-07 at 03:02

            I'm trying to convert the output of this code into a dataframe. The code takes a tab-separated txt file from AWS S3 and turns it into a csv

            ...

            ANSWER

            Answered 2022-Jan-07 at 03:02

            After set "txt" variable with s3 bucket contents, do this to load to dataframe:

            Source https://stackoverflow.com/questions/70601359

            QUESTION

            How to display a ChoiceField's text through Django template to a user?
            Asked 2021-Dec-13 at 11:21

            models.py:

            ...

            ANSWER

            Answered 2021-Dec-13 at 11:21

            The first solution does not work because title is a str and you are comparing it with integers. Below will work:

            Source https://stackoverflow.com/questions/70332865

            QUESTION

            Link object key with return value returned function
            Asked 2021-Nov-29 at 17:19
            // try trim string
            export default function safeTrim(value: unknown): string | undefined {
              if (typeof value === 'string') {
                return value.trim();
              }
              return undefined;
            }
            
            // index and items used for array
            type Validator = (item: T, index?: number, items?: T[]) => null | { [key in keyof T]: string[] };
            
            export function emptyValidator(keyName: keyof T): Validator {
              return (item) => {
                if (!safeTrim(item[keyName])) {
                  // @ts-ignore
                  const error: { [key in keyof T]: string[]} = { // line 18
                      [keyName]: [`Field should not be empty`],
                    };
                    return error;
                }
                return null;
              };
            }
            
            // ======= examples usage ======== 
            
            const testObject = {
                propThatReturnNull: 'some string',
                propThatReturnError1: '',
                propThatReturnError2: undefined,
                propThatReturnError3: null
            } as const;
            
            emptyValidator('propThatReturnNull')(testObject); // should return null
            emptyValidator('propThatReturnError1')(testObject); // should return {propThatReturnError1: [`Field should not be empty`]}
            emptyValidator('propThatReturnError2')(testObject); // should return {propThatReturnError2: [`Field should not be empty`]}
            emptyValidator('propThatReturnError3')(testObject); // should return {propThatReturnError3: [`Field should not be empty`]}
            
            ...

            ANSWER

            Answered 2021-Nov-29 at 17:07

            The { [key in keyof T]: string[] } type is a mapped type and it can't be inferred automatically by TypeScript in the function implementation, so you have to type the return value explicitly:

            Source https://stackoverflow.com/questions/70157092

            QUESTION

            Error when exporting to csv using write.csv and write_csv {r}
            Asked 2021-Nov-11 at 07:47

            I have a data frame similar to the one below (only longer). When I try to export it (with different methods/packages, I keep getting the same error:

            ...

            ANSWER

            Answered 2021-Nov-11 at 07:39

            If you look at the structure of the data.frame, you'll notice that it's a complex object - a data.frame of data.frames and lists and what-have-you.

            Source https://stackoverflow.com/questions/69924449

            QUESTION

            map through array of objects Typescript
            Asked 2021-Aug-09 at 21:23

            I'm new to typescript and I'm trying to fetch some data which is array of objects. I want to extract one field from these objects and I'm using Array.map() for that, but argument for the method is any(because I didn't specify the type) and I can't access any fields of the object. The thing is, I could use interface or type to construct the object type I get but the objects in the array have many fields and are nested. So is there another, simpler way to solve this problem? Here's the code:

            ...

            ANSWER

            Answered 2021-Aug-09 at 21:23

            The thing is, I could use interface or type to construct the object type I get but the objects in the array have many fields and are nested.

            This is the beauty of interfaces though. You don't necessarily need to write up the full type, but only the properties you are interested in. Just because you don't give type information to the full response object and all of it's complex nested values, it doesn't mean that the service won't return those at runtime.

            Based on res.data.photos.map(photo => photo.img_src), It looks like the shape of the data you are interested in would be a data property, which contains a photos property, which is an array of complex objects that you map through in order to grab the img_src property.

            So I would write up two interfaces, one for the response, and the other for the property of the photo object:

            Source https://stackoverflow.com/questions/68699915

            QUESTION

            Exclude a certain tag in crawling with Scrapy
            Asked 2021-Jul-18 at 08:13

            I am working on crawling a webpage. A section of the source code of the page, is below:

            ...

            ANSWER

            Answered 2021-Jul-18 at 08:13

            extract() will return a list, so "The Problem" paragraph is introduction[0], and "The Strategy" paragraph is introduction[1].

            If you want to scrape them separately you can use this:

            Source https://stackoverflow.com/questions/68411513

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install MAST

            You can download it from GitHub.
            You can use MAST like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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