CNCI | Coding-Non-Coding Index | Machine Learning library

by www-bioinfo-org Python Version: Current License: GPL-2.0

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | CNCI Summary

CNCI is a Python library typically used in Healthcare, Pharma, Life Sciences, Artificial Intelligence, Machine Learning, Deep Learning, Tensorflow applications. CNCI has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. However CNCI build file is not available. You can download it from GitHub.

It is a challenge to classify protein-coding or non-coding transcripts, especially those re-constructed from high-throughput sequencing data of poorly annotated species. We developed and evaluated a powerful signature tool, Coding-Non-Coding Index (CNCI), by profiling adjoining nucleotide triplets to effectively distinguish protein-coding and non-coding sequences independent of known annotations. CNCI is effective for classifying incomplete transcripts and sense-antisense pairs. The implementation of CNCI offered highly accurate classification of transcripts assembled from whole-transcriptome sequencing data in a cross-species manner, that demonstrated gene evolutionary divergence between vertebrates, and invertebrates, or between plants, and provided a long non-coding RNA catalog of orangutan.

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Quality

Security

License

Reuse

Support

CNCI has a low active ecosystem.

It has 26 star(s) with 32 fork(s). There are 6 watchers for this library.

It had no major release in the last 6 months.

There are 6 open issues and 0 have been closed. On average issues are closed in 873 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of CNCI is current.

Quality

CNCI has 0 bugs and 0 code smells.

Security

CNCI has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

CNCI code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

CNCI is licensed under the GPL-2.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

CNCI releases are not available. You will need to build from source code and install.

CNCI has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed CNCI and discovered the below as its top functions. This is intended to give you an instant insight into CNCI implemented functionality, and help decide if they suit your requirements.

Convenience function to get a fasta file
Convert to Bed object

Get all kandi verified functions for this library.

CNCI Key Features

No Key Features are available at this moment for CNCI.

CNCI Examples and Code Snippets

No Code Snippets are available at this moment for CNCI.

Community Discussions

Trending Discussions on CNCI

Convert multiple rows to multiple columns (long to wide format does not work (?))

QUESTION

Convert multiple rows to multiple columns (long to wide format does not work (?))

Asked 2020-Jul-06 at 08:46

I have a dataset with multiple journal articles in it. The different articles all have different identification codes (WoS_No). Different articles are on different rows.

These articles have different numbers of authors. If a paper has more than 1 author, the identification code gets duplicated over multiple rows, with one row per author.

There is other information in the df, some of which relates to the paper (and is the same for all rows with the same WoS_No code. But, some relates to the authors only (like their faculty) which is then printed out over rows.

Please see example below:

...

ANSWER

Answered 2020-Jul-06 at 08:08

You can first keep only unique rows using distinct, group_by WoS_No to create an unique identifier column and get data in wide format.

Source https://stackoverflow.com/questions/62751702

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install CNCI

At the first time to running CNCI, we suggest you to install "libsvm-3.0" that stored in our package.

Support

CNCI has update to version 2,in this version some bugs have be fixed,and more friendly for users. CNCI can run in 32-bit Linux, 64-bit Linux. Please note that: CNCI's input file must not be empty.

Find more information at: