TAME | KDD2020 paper ; Identifying Sepsis Subphenotypes via Time | Machine Learning library
kandi X-RAY | TAME Summary
kandi X-RAY | TAME Summary
This repository contains the official PyTorch implementation of the following paper:. Identifying Sepsis Subphenotypes via Time-Aware Multi-ModalAuto-Encoder (KDD2020) Changchang yin, Ruoqi Liu, Dongdong Zhang, Ping Zhang paper Abstract: Sepsis is a heterogeneous clinical syndrome that is the leading cause of mortality in hospital intensive care units (ICUs). Identification of sepsis subphenotypes may allow for more precise treatments and lead to more targeted clinical interventions. Recently, sepsis subtyping on electronic health records (EHRs) has attracted interest from healthcare researchers. However, most sepsis subtyping studies ignore the temporality of EHR data and suffer from missing values. In this paper, we propose a new sepsis subtyping framework to address the two issues. Our subtyping framework consists of a novel Time-Aware Multi-modal auto-Encoder (TAME) model which introduces time-aware attention mechanism and incorporates multi-modal inputs (e.g., demographics, diagnoses, medications, lab tests and vital signs) to impute missing values, a dynamic time wrapping (DTW) method to measure patients' temporal similarity based on the imputed EHR data, and a weighted k-means algorithm to cluster patients. Comprehensive experiments on real-world datasets show TAME outperforms the baselines on imputation accuracy. After analyzing TAME-imputed EHR data, we identify four novel subphenotypes of sepsis patients, paving the way for improved personalization of sepsis management.
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Top functions reviewed by kandi - BETA
- Forward embedding
- Embed x - order embedding
- Embed value embedding
- Time - aware attention
- Compute the distribution matrices from the results
- Compute the DFT
- Compute the distance between two vectors
- Compute the distance between two points
- Merge pivoted data
- Convert a time to an integer
- Create a directory
- Compute the classification loss
- Performs soft mining
- Generate a dictionary of individual ids
- Map Eidos ids
- Select all variables that are not in pivoted
- Generate the drug data
- Run wkmeans
- Generate the missing data for each training
- Generate variables that are not in pivoted
- Generate diagnostic data
- Sort pivoted data files
- Generate a dictionary for train_groundtruth
- Generate ehr files
- Generate demo
- Splits training data to 10
TAME Key Features
TAME Examples and Code Snippets
Community Discussions
Trending Discussions on TAME
QUESTION
Our app can track clients who walk in to our clinic without an appointment. We started with a simple WalkIn model and WalkInsController.
Then we added another type of walk-in, then another ... so now our #index action has to filter between four different walk-in types and sometimes treat them differently.
The other REST actions (besides #show) are mostly the same between types, but might have some minor differences. We also have a few non-REST methods that don't really fit anywhere else.
So, at minimum, this #index action needs to be tamed.
First thought: I'll namespace walk_ins just for #index:
...ANSWER
Answered 2021-Jun-07 at 04:05you can move all walk_ins filter inside collection block like this
QUESTION
I want to re-format the text below using Python 3
...ANSWER
Answered 2021-Jun-04 at 05:29text ="""alif
: the letter a [Sem ’-l-p (ox), Heb alef]
alifa
: be trusted, accustomed, tame
alima
: feel pain
"""
print(text.replace('\n:',''))
output:
alif the letter a [Sem ’-l-p (ox), Heb alef]
alifa be trusted, accustomed, tame
alima feel pain
QUESTION
I am using localtunnel to expose my backend and frontend. Right now, I have a very simple setup like this one:
...ANSWER
Answered 2021-May-12 at 16:07I found the solution for my problem. Looks like you first need to access to the dynamic url serving your backend and click on "Continue". After doing that, CORS won't be a problem anymore.
QUESTION
The goal is to reproduce this home page from meet up, where the video is placed bellow the navbar.
The issueDifferent from images, videos are difficult to tame inside the div element. The aspect ratio is kept, but the video leaves white spaces in the div. As far as i know, object-fit is only supported by 'traditional' html. The attempts to make it work in React js object-fit failed. How to fully fill a div with a video tag in React js?
Link to code sandbox https://codesandbox.io/s/react-video-sandbox-forked-drm8o?file=/src/index.js
Thanks for reading!
...ANSWER
Answered 2021-Apr-09 at 02:24If I understood your goal correctly, then this might be what you want:
https://codesandbox.io/s/react-video-sandbox-forked-8lkmj?file=/src/index.js
I basically just tried to copy what meetup does.
To do this we don't need to use object-fit.
We can just write some regular CSS styling to achieve this.
To remove the white spaces you had, I just let the video wrapper element be 100% of the parent size (width & height), and then centered the video with flex-box.
I tried to add some descriptive comments to my fork of your codesandbox.
QUESTION
I have the following json successfully back from the api call:
...ANSWER
Answered 2020-Nov-14 at 15:58Top-level in your json is Type with property Done. Create type:
QUESTION
I have to group this JSON by artist and get the sumatory of total listeners per artist. Once this is done I need to get the most listened artist and show h the songs. What would be the most efficient way? I've tryed several ways but can't get it. Is there any JS function to do it?
This is the JSON:
...ANSWER
Answered 2020-Nov-01 at 22:01Something like this?
QUESTION
I am having trouble removing an item from my flatlist in react native. I am using the filter method to filter out the list that doesn't have the ID entered by the user to delete, but it doesn't seem to work. I don't know what I am doing wrong here. When I click on the delete button the list isn't updated.
This is what I have so far:
...ANSWER
Answered 2020-Oct-27 at 21:26You've written it assuming a click/press event would be passed as the id of the element to delete.
QUESTION
I have a JSON file with two arrays. I'd like to combine the arrays into a single array of objects, each of which contains an element from each of the original arrays.
JSON input looks like this:
...ANSWER
Answered 2020-Oct-05 at 14:30I used range() to iterate over the elements of the arrays:
QUESTION
I am trying to align the header, body, footer, and div's vertically in one column such that the web design is responsive (looks good on different screen sizes): ConfluenceInfinite.org or see dev subdomain below.
For people who are new to html and css (like me) this is a pure css/html implementation/markup including the menu.
You can go to my development subdomain to see the issue first-hand: my development subdomain: dev.confluenceinfinite.org
I have done LOT of research on this. Here is some of that research:
I don't believe this question/answer applies to my issue because my issue is vertical alignment (correct me if I am wrong). It uses fixed px values, which won't work for cell phones, and I tried the display: inline-block, but it didn't work. Here is the link to the SO question:
click here
This question/answer (which got via searching OS tag vertical-alignment) also has a fixed width that I do not want to do because I want the
I don't think this helps either because it aligns elements within a container, but I want the containers/div's aligned. Am I missing something?: click here
This solution has the correct title/heading, but aligns things on the "right" vertically, which don't seem applicable to my issue: Click here
I used to use a website or program that allowed a developer to test/visualize website design on multiple screen sizes. I can no longer find that site. If you know the location of that site, please comment or put it in your answer. Thanks!
Here is my index/home page html markup:
ANSWER
Answered 2020-Oct-01 at 15:54I really appreciate the focus and politeness of your question. I’ve barely seen something like that. As for the issue, I split it in two parts, one for the image and one for the footer. Responsive Web Design is definitely what you’re looking for. As for the image, replace
QUESTION
I have several problems:
...ANSWER
Answered 2020-Sep-29 at 15:07You need to pay attention to the first error message and the error location in the two lines after that. The other messages are the call stack, telling you how the error line was called from the main program.
The error is that in Matlab, array indices start with 1, not 0, so you need to shift all indices one up.
In this specific case you could formulate the ODE function without indices using the matrix-vector product as
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Install TAME
You can use TAME like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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