elegant | tools and pipelines for zplab C. elegans data

 by   zplab Python Version: Current License: MIT

kandi X-RAY | elegant Summary

kandi X-RAY | elegant Summary

elegant is a Python library. elegant has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

tools and pipelines for zplab C. elegans data.
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            kandi-support Support

              elegant has a low active ecosystem.
              It has 2 star(s) with 3 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 0 open issues and 1 have been closed. On average issues are closed in 21 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of elegant is current.

            kandi-Quality Quality

              elegant has 0 bugs and 0 code smells.

            kandi-Security Security

              elegant has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              elegant code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              elegant is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              elegant releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              Installation instructions are not available. Examples and code snippets are available.
              It has 3663 lines of code, 362 functions and 31 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed elegant and discovered the below as its top functions. This is intended to give you an instant insight into elegant implemented functionality, and help decide if they suit your requirements.
            • Finds the centerline pixels in the center of the centerline pixels .
            • Read data from files .
            • Convert a list of images into a pandas DataFrame .
            • Scans an experiment directory .
            • Measure a bunch of rotations .
            • Write timecourse data .
            • Filters the given positions according to the given filter .
            • Convert images to lab frame .
            • Generate meta - worm objects for each group .
            • Get the age range of a given feature .
            Get all kandi verified functions for this library.

            elegant Key Features

            No Key Features are available at this moment for elegant.

            elegant Examples and Code Snippets

            No Code Snippets are available at this moment for elegant.

            Community Discussions

            QUESTION

            How to apply one signature test to multiple positionals
            Asked 2022-Feb-03 at 16:01

            I wrote some code in https://github.com/p6steve/raku-Physics-Measure that looks for a Measure type in each maths operation and hands off the work to non-standard methods that adjust Unit and Error aspects alongside returning the new value:

            ...

            ANSWER

            Answered 2021-Dec-30 at 03:53

            There are a few ways to approach this but what I'd probably do – and a generally useful pattern – is to use a subset to create a slightly over-inclusive multi and then redispatch the case you shouldn't have included. For the example you provided, that might look a bit like:

            Source https://stackoverflow.com/questions/70525665

            QUESTION

            ScrollViewReader scrollTo with .center anchor bug?
            Asked 2022-Jan-31 at 10:38

            So I'm try to use ScrollViewReader to programmatically scroll a horizontal scroll view. I thought it would work like scrollToItem with .centeredHorizontally in UIKit, and for the most part it does, but the last few elements in the scroll view are being forcefully scrolled to the center of the screen, despite the fact that the scroll view isn't normally able to scroll that far over (without snapping back after releasing the drag, at least). This ends up creating white space across the trailing half of the screen.

            I've seen some other questions about this and it seems like the general opinion is that it's not a bug? On the one hand I suppose we're telling the scroll view to center the item, and it's doing just that -- so, not a bug? On the other hand, that's not how similar functionality worked in UIKit. Also, this behavior is only happening on the trailing end of the scroll view! If it was the intended behavior I would expect that scrolling to the first element in the scroll view using .center anchor would force it into the center of the screen and leave leading white space, but this doesn't happen.

            Is there an elegant solution to this? Or do we have to calculate the width of our elements + spacing and figure out based on the screen width whether we should anchor .center or just scroll to the last element with anchor .trailing in order to replicate the UIKit behavior?

            ...

            ANSWER

            Answered 2021-Jul-25 at 06:31

            I found a package (Amzd/ScrollViewProxy) that was made before ScrollViewReader was released that functions much the same as ScrollViewReader, but also seems to not have the bug (if it is a bug) detailed in the question.

            Usage examples can be seen on the repository page, but here's a quick minimal example.

            Source https://stackoverflow.com/questions/68515053

            QUESTION

            C++ Copy Constructors: must I spell out all member variables in the initializer list?
            Asked 2022-Jan-30 at 04:18

            I have some pretty complicated objects. They contain member variables of other objects. I understand the beauty of copy constructors cascading such that the default copy constructor can often work. But, the situation that may most often break the default copy constructor (the object contains some member variables which are pointers to its other member variables) still applies to a lot of what I've built. Here's an example of one of my objects, its constructor, and the copy constructor I've written:

            ...

            ANSWER

            Answered 2022-Jan-30 at 02:54

            C++ Copy Constructors: must I spell out all member variables in the initializer list?

            Yes, if you write a user defined copy constructor, then you must write an initialiser for every sub object - unless you wish to default initialise them, in which case you don't need any initialiser - or if you can use a default member initialiser.

            the object contains some member variables which are pointers to its other member variables)

            This is a design that should be avoided when possible. Not only does this force you to define custom copy and move assignment operators and constructors, but it is often unnecessarily inefficient.

            But, in case that is necessary for some reason - or custom special member functions are needed for any other reason - you can achieve clean code by combining the normally copying parts into a separate dummy class. That way the the user defined constructor has only one sub object to initialise.

            Like this:

            Source https://stackoverflow.com/questions/70911220

            QUESTION

            How to imitate Pythonic indexing of arrays in Julia
            Asked 2022-Jan-11 at 00:42

            I am translating a code from Python to Julia. I have the following array:

            ...

            ANSWER

            Answered 2022-Jan-10 at 21:41

            Effectively what you're after is a very specific case of a circular array. You achieve that with mod1. It'll "wrap around" values outside of the valid indices. It takes two arguments; the first is the value (the index to wrap) and the second is the modulus (the length of the array). In the context of indexing, you can just use that special end syntax for the modulus:

            Source https://stackoverflow.com/questions/70656671

            QUESTION

            How to create a new data table based on pairwise combinations of a subset of column names?
            Asked 2022-Jan-08 at 00:15

            I am trying to define a function that takes a data frame or table as input with a specific number of ID columns (e.g., 2 or 3 ID columns), and the remaining columns are NAME1, NAME2, ..., NAMEK (numeric columns). The output should be a data table that consists of the same ID columns as before plus one additional ID column that groups each unique pairwise combination of the column names (NAME1, NAME2, ...). In addition, we must gather the actual values of the numeric columns into two new columns based on the ID column; an example with two ID columns and three numeric columns:

            ...

            ANSWER

            Answered 2021-Dec-29 at 11:06

            Attention:

            Here is an inspiring idea which is not fully satisfy OP's requirement (e.g., ID.new and number order) but I think it worth to be recoreded here.

            You can turn DT into long format by melt firstly. Then to shift value with the step -nrow(DT) in order to do the minus operation, i.e. NAME1 - NAME2, NAME2 - NAME3, NAME3 - NAME1.

            Source https://stackoverflow.com/questions/70495334

            QUESTION

            Which rows/columns are duplicates of which others in R matrices?
            Asked 2022-Jan-06 at 23:18

            I have a matrix with many rows and columns, of the nature

            ...

            ANSWER

            Answered 2022-Jan-02 at 17:02

            QUESTION

            Is there a Pythonic way of filtering substrings of strings in a list?
            Asked 2022-Jan-05 at 04:25

            I have a list with strings as below.

            ...

            ANSWER

            Answered 2022-Jan-05 at 04:09

            QUESTION

            Extract data frames from nested list
            Asked 2021-Dec-29 at 00:06

            I have a nested list of lists which contains some data frames. However, the data frames can appear at any level in the list. What I want to end up with is a flat list, i.e. just one level, where each element is only the data frames, with all other things discarded.

            I have come up with a solution for this, but it looks very clunky and I am sure there ought to be a more elegant solution.

            Importantly, I'm looking for something in base R, that can extract data frames at any level inside the nested list. I have tried unlist() and dabbled with rapply() but somehow not found a satisfying solution.

            Example code follows: an example list, what I am actually trying to achieve, and my own solution which I am not very happy with. Thanks for any help!

            ...

            ANSWER

            Answered 2021-Dec-28 at 22:13

            Maybe consider a simple recursive function like this

            Source https://stackoverflow.com/questions/70512869

            QUESTION

            replace values with NA in several columns
            Asked 2021-Dec-27 at 19:54

            I have a huge dataset and wish to replace values in certain columns (VAR1, VAR2) with NA if they do not start with AA or DD.

            Data:

            ...

            ANSWER

            Answered 2021-Dec-27 at 19:20

            Here is another tidyverse solution with using str_detect to determine where to convert to NA for the date columns. Then, we can use the same type of function on VAR1 and VAR2.

            Source https://stackoverflow.com/questions/70499379

            QUESTION

            How to find intersection of values that meet multiple conditions in R?
            Asked 2021-Dec-25 at 22:03

            Assume I have the following data frame:

            ...

            ANSWER

            Answered 2021-Dec-04 at 14:32

            Since the years are distinct and in the desired set we only have to count how many there are for each company. (If that is not true, in general, then apply the solutions below to df2 <- unique(merge(df, data.frame(year = 2010:2012))) in place of df. Also if we did not know the value 3 and we wanted it to equal the number of unique years in the data then we could compute it using length(unique(df$year)).

            Now, using that idea here are several alternatives. We can use table to get their frequencies and then keep those with frequency 3 or in the last case we can use dplyr's count and then filter to get those with a count of 3.

            Source https://stackoverflow.com/questions/70221117

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install elegant

            You can download it from GitHub.
            You can use elegant like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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