ParBayesianOptimization | Parallelizable Bayesian Optimization in R | Machine Learning library
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kandi X-RAY | ParBayesianOptimization Summary
Parallelizable Bayesian Optimization in R
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ParBayesianOptimization Key Features
ParBayesianOptimization Examples and Code Snippets
library("xgboost")
data(agaricus.train, package = "xgboost")
Folds <- list(
Fold1 = as.integer(seq(1,nrow(agaricus.train$data),by = 3))
, Fold2 = as.integer(seq(2,nrow(agaricus.train$data),by = 3))
, Fold3 = as.integer(seq(3,nrow(agaricu
simpleFunction <- function(x) dnorm(x,3,2)*1.5 + dnorm(x,7,1) + dnorm(x,10,2)
# Find the x that maximizes our simpleFunction
xmax <- optim(8,simpleFunction,method = "L-BFGS-B",lower = 0, upper = 15,control = list(fnscale = -1))$par
# Get a vi
library(doParallel)
cl <- makeCluster(2)
registerDoParallel(cl)
clusterExport(cl,c('Folds','agaricus.train'))
clusterEvalQ(cl,expr= {
library(xgboost)
})
tWithPar <- system.time(
optObj <- bayesOpt(
FUN = scoringFunction
, bou
Community Discussions
Trending Discussions on ParBayesianOptimization
QUESTION
I am working with R. I found this previous post on stackoverflow which shows how to get a "list" of all functions that belong to a given library:
How to find all functions in an R package?
For example:
...ANSWER
Answered 2021-Jul-16 at 06:59This code will help you write the function definitions of all the functions in a library to a text file.
QUESTION
I am working with R. I am trying to follow the example from this page (https://cran.r-project.org/web/packages/ParBayesianOptimization/vignettes/functionMaximization.html) on optimization - I tried to make a new example for a function with "multiple inputs".
For example:
...ANSWER
Answered 2021-Jul-13 at 04:51I'm not sure if your error is because of your R version, in my case it is 4.1.0.
I run your code and it has an issue.
QUESTION
I am following the instructions from this tutorial (https://cran.r-project.org/web/packages/ParBayesianOptimization/vignettes/functionMaximization.html) on how to optimize functions using the R programming language.
I wanted to modify the example in this tutorial to include a slightly more complicated example.
I defined the following function :
...ANSWER
Answered 2021-Jul-12 at 16:06According to your indicated example this should work:
QUESTION
I am currently using the R package ParBayesianOptimization
to tune parameters for ML methods. While searching for an optimal cost
parameter for the svmLinear2
model (contained in caret
), the optimization stopped with a sudden error after successfully completing 15 iterations.
Here is the error traceback:
...ANSWER
Answered 2021-May-10 at 20:28It appears that the scoring function returned NA
s in place of accuracy measures leading to the error later downstream. This has been described by the library's creator at
https://github.com/AnotherSamWilson/ParBayesianOptimization/issues/33.
It looks like the SVM is trying a cost
of 0
during the 9th iteration. Given the problem statement the SVM is solving the cost
parameter should probably be positive.
According to AnotherSamWilson, this error may commonly occur when the scoring function "returns something unexpected".
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