Bioinformatics-Training | Bioinformatics training resources

by PacificBiosciences R Version: Current License: No License

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kandi X-RAY | Bioinformatics-Training Summary

Bioinformatics-Training is a R library. Bioinformatics-Training has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

This is a resource for learning more about PacBio data and bioinformatics analysis. THIS WEBSITE AND CONTENT AND ALL SITE-RELATED SERVICES, INCLUDING ANY DATA, ARE PROVIDED "AS IS," WITH ALL FAULTS, WITH NO REPRESENTATIONS OR WARRANTIES OF ANY KIND, EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, ANY WARRANTIES OF MERCHANTABILITY, SATISFACTORY QUALITY, NON-INFRINGEMENT OR FITNESS FOR A PARTICULAR PURPOSE. YOU ASSUME TOTAL RESPONSIBILITY AND RISK FOR YOUR USE OF THIS SITE, ALL SITE-RELATED SERVICES, AND ANY THIRD PARTY WEBSITES OR APPLICATIONS. NO ORAL OR WRITTEN INFORMATION OR ADVICE SHALL CREATE A WARRANTY OF ANY KIND. ANY REFERENCES TO SPECIFIC PRODUCTS OR SERVICES ON THE WEBSITES DO NOT CONSTITUTE OR IMPLY A RECOMMENDATION OR ENDORSEMENT BY PACIFIC BIOSCIENCES.

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Support

Bioinformatics-Training has a low active ecosystem.

It has 390 star(s) with 134 fork(s). There are 122 watchers for this library.

It had no major release in the last 6 months.

There are 21 open issues and 38 have been closed. On average issues are closed in 79 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of Bioinformatics-Training is current.

Quality

Bioinformatics-Training has no bugs reported.

Security

Bioinformatics-Training has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

Bioinformatics-Training does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

Bioinformatics-Training releases are not available. You will need to build from source code and install.

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Bioinformatics-Training Key Features

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Bioinformatics-Training Examples and Code Snippets

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Community Discussions

Trending Discussions on Bioinformatics-Training

How to load Seurat Object into WGCNA Tutorial Format

QUESTION

How to load Seurat Object into WGCNA Tutorial Format

Asked 2021-Aug-22 at 23:27

As far as I can find, there is only one tutorial about loading Seurat objects into WGCNA (https://ucdavis-bioinformatics-training.github.io/2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF/scrnaseq_analysis/scRNA_Workshop-PART6.html). I am really new to programming so it's probably just my inexperience, but I am not sure how to load my Seurat object into a format that works with WGCNA's tutorials (https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/).

Here is what I have tried thus far:

This tries to replicate datExpr and datTraits from part I.1:

...

ANSWER

Answered 2021-Aug-22 at 23:27

So doing as.matrix(datExpr) right after datExpr <- t(sobjwgcnamat)[,VariableFeatures(sobjwgcna)] worked. I had been trying it right before MEList = moduleEigengenes(datExpr, colors = moduleColors) and that didn't work. Seems simple but order matters I guess.

Source https://stackoverflow.com/questions/68853859

QUESTION

similar to an older question "add header to columns from list text file"

Asked 2020-Oct-29 at 15:59

I am trying to add some headers to a txt file. Actually i have found a script already but I want to edit a part of it. Script (you can also find it here if you like: https://ucdavis-bioinformatics-training.github.io/2017-June-RNA-Seq-Workshop/thursday/counts.html):

...

ANSWER

Answered 2020-Oct-29 at 15:59

You can make use of cut to get a range from a tab delimited line of words.

Source https://stackoverflow.com/questions/64591512

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Bioinformatics-Training

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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