flowWorkspace | This package is designed to store , query and visualize

by RGLab R Version: bioc_3.12 License: Non-SPDX

X-Ray Key Features Code Snippets(2)Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | flowWorkspace Summary

flowWorkspace is a R library. flowWorkspace has no bugs, it has no vulnerabilities and it has low support. However flowWorkspace has a Non-SPDX License. You can download it from GitHub.

This package is designed to store, query and visualize the hierarchical gated flow data. It also facilitates the comparison of automated gating methods against manual gating by. importing basic flowJo workspaces into R and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies,. groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.

Support

Quality

Security

License

Reuse

Support

flowWorkspace has a low active ecosystem.

It has 34 star(s) with 17 fork(s). There are 13 watchers for this library.

It had no major release in the last 12 months.

There are 30 open issues and 320 have been closed. On average issues are closed in 92 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of flowWorkspace is bioc_3.12

Quality

flowWorkspace has no bugs reported.

Security

flowWorkspace has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

flowWorkspace has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

flowWorkspace releases are available to install and integrate.

Installation instructions are not available. Examples and code snippets are available.

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flowWorkspace Key Features

No Key Features are available at this moment for flowWorkspace.

flowWorkspace Examples and Code Snippets

Import flowJo workspace

Lines of Code : 18

License : Non-SPDX (NOASSERTION)

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library(flowWorkspace)
dataDir <- system.file("extdata", package="flowWorkspaceData")
wsfile <- list.files(dataDir, pattern="manual.xml",full=TRUE)
ws <- openWorkspace(wsfile);
gs <- parseWorkspace(ws, path = dataDir, name = 4, subset = "

INSTALLATION

Lines of Code : 8

License : Non-SPDX (NOASSERTION)

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# First, install it from bionconductor so that it will pull all the dependent packages automatically
library(BiocInstalller)
bicLite(flowWorkspace) # may be older
# Then, install the latest version from github using devtools package 
install.packages

Community Discussions

Trending Discussions on flowWorkspace

'aclocal-1.14' is missing when installing R package in docker container

QUESTION

'aclocal-1.14' is missing when installing R package in docker container

Asked 2017-Nov-15 at 16:36

I am trying to install the package flowDensity when building a docker container using the latest bioconductor image release_core2. I receive the following error:

ERROR: dependencies ‘rgeos’, ‘flowWorkspace’ are not available for package ‘flowDensity’

I could fix the first one by adding apt-get install libgeos-dev to the dockerfile. However, the second one is more tricky. It comes down to the package RProtoBufLib, which is a dependency for cytolib and hence for flowWorkspace. I receive the following error when installing RProtoBufLib:

...

ANSWER

Answered 2017-Nov-15 at 16:36

I've recreated your issue on my local environment. The problem is that you don't have automake, autoconf and libtoolize installed.

These are my install.R and Dockerfile script.

install.R:

Source https://stackoverflow.com/questions/47309254

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