MAST | Tools and methods for analysis of single cell assay data | Genomics library

 by   RGLab R Version: v1.0.1 License: No License

kandi X-RAY | MAST Summary

kandi X-RAY | MAST Summary

MAST is a R library typically used in Artificial Intelligence, Genomics applications. MAST has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

MAST: Model-based Analysis of Single-cell Transcriptomics.
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              MAST has a low active ecosystem.
              It has 127 star(s) with 45 fork(s). There are 10 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 25 open issues and 126 have been closed. On average issues are closed in 91 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of MAST is v1.0.1

            kandi-Quality Quality

              MAST has no bugs reported.

            kandi-Security Security

              MAST has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              MAST does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              MAST releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.

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            MAST Key Features

            No Key Features are available at this moment for MAST.

            MAST Examples and Code Snippets

            No Code Snippets are available at this moment for MAST.

            Community Discussions

            QUESTION

            How does one attach to just the primary node of a mongo instance?
            Asked 2021-Jun-08 at 12:20

            This might be me misunderstanding how Mongo works/new Go dev - but I'm not able to connect to my mongo instance from Go. When I connect to my Mongo instance using Studio 3T, I can connect just fine, browse the tables, etc. But If I try to connect using the Go module, it complains about not being able to find all the nodes. Is it necessary for it to be able to access all nodes? I thought the replica set itself was supposed to handle the replication?

            For example, I have this Go code:

            ...

            ANSWER

            Answered 2021-Jun-08 at 12:12

            Do I actually need to expose all the replica sets as well?

            Yes. Clients need to see all nodes in a replica set, so they can fail over when master goes down.

            Source https://stackoverflow.com/questions/67886337

            QUESTION

            Openstack Octavia Error: WARNING octavia.amphorae.drivers.haproxy.rest_api_driver [-] Could not connect to instance
            Asked 2021-May-14 at 18:28

            I'm final student who research and implement Openstack Victoria. When I configure Project: Octavia - Loadbalancer on multi-node - CentOS8, I have a issue. Seem like octavia.amphorae.drivers.haproxy.rest_api_driver couldn't connect to Amphora instance and port 9443 didn't run on my Network Node aka Octavia-API. In controller node, the amphora instance still running nornally. I follow https://www.server-world.info/en/note?os=CentOS_8&p=openstack_victoria4&f=11 to configure my lab. This is my cfg file below, pls help me to figure out. Regards!

            I created lb_net in type vxlan and lb-secgroup, when i use command to create lb it still pending-create:

            ...

            ANSWER

            Answered 2021-May-14 at 18:28

            Okay, my problem is fixed. The Octavia-api node can't connect to amphorae-instance because they do not match the same network type (node - LAN and amphorae - VXLAN). So, I create a bridge interface at a node to convert vxlan for lan can connect (You can read here at step 7: create a network).

            Best regard!

            Source https://stackoverflow.com/questions/67406980

            QUESTION

            How can i work with Example for nlp.update problem with spacy3.0
            Asked 2021-May-06 at 04:05

            i am trying to train my data with spacy v3.0 and appareantly the nlp.update do not accept any tuples. Here is the piece of code:

            ...

            ANSWER

            Answered 2021-May-06 at 04:05

            You didn't provide your TRAIN_DATA, so I cannot reproduce it. However, you should try something like this:

            Source https://stackoverflow.com/questions/66675261

            QUESTION

            How to access values deep inside a python list?
            Asked 2021-Mar-28 at 06:36

            I am trying get the definitions of certain words using this code:

            ...

            ANSWER

            Answered 2021-Mar-28 at 05:56

            QUESTION

            How to process a json response from an API in C#
            Asked 2021-Mar-15 at 17:42

            I've read and reread articles online on how to do this, but it's probably something simple. I'm trying to learn how to process a json response from an API call. I have a simple method I call from Main()

            ...

            ANSWER

            Answered 2021-Mar-15 at 17:28

            Can you try the following amendment

            Source https://stackoverflow.com/questions/66642501

            QUESTION

            Kotlin 1.4.30 Apache beam compilation error
            Asked 2021-Feb-24 at 11:09

            I was trying to update to latest kotlin verion 1.4.30 an Apache Beam dataflow pipeline that is currently running with kotlin 1.4.21 but as soon as I upgrade build.gradle with version 1.4.30 the compilation fails with this exception:

            ...

            ANSWER

            Answered 2021-Feb-24 at 11:09

            It causes by the Kotlin compiler.

            Sorry for nuisance, I'm currently fixing that on the compiler's side. The fix will be available in Kotlin 1.5-M1.

            Unfortunately, there are no normal workarounds here, since the problem occurs when reading class files (it's impossible to exclude the problematic logic in the mechanism for reading class files).

            Source https://stackoverflow.com/questions/66170900

            QUESTION

            Yarn as resource manager in SPARK for linux cluster - inside Kubernetes and outside Kubernetes
            Asked 2021-Feb-14 at 16:04

            If I am using Kubernetes cluster to run spark, then I am using Kubernetes resource manager in Spark.

            If I am using Hadoop cluster to run spark, then I am using Yarn resource manager in Spark.

            But my question is, if I am spawning multiple linux nodes in kebernetes, and use one of the node as spark maste and three other as worker, what resource manager should I use? can I use yarn over here?

            Second question, in case of any 4 node linux spark cluster (not in kubernetes and not hadoop, simple connected linux machines), even if I do not have hdfs, can I use yarn here as resource manager? if not, then what resource manager should be used for saprk?

            Thanks.

            ...

            ANSWER

            Answered 2021-Feb-14 at 16:04

            if I am spawning multiple linux nodes in kebernetes,

            Then you'd obviously use kubernetes, since it's available

            in case of any 4 node linux spark cluster (not in kubernetes and not hadoop, simple connected linux machines), even if I do not have hdfs, can I use yarn here

            You can, or you can use Spark Standalone scheduler, instead. However Spark requires a shared filesystem for reading and writing data, so, while you could attempt to use NFS, or S3/GCS for this, HDFS is faster

            Source https://stackoverflow.com/questions/66193490

            QUESTION

            Issue whilst installing the pypy kernel to jupyter notebook
            Asked 2020-Dec-31 at 16:41

            I am trying to install pypy3 to jupyter notebook but whilst doing it, it gives me an error at the source code bit during the cmd installation. I am on windows 10 64 bit system. Would this bit affect anything, from my backtests of large files the runtime has not been that much better in comparison to python which makes me believe that pypy is not working properly. I am trying to execute the answer to this previous question on stack overflow: enter link description here. even though that source PyPy3/bin/activate bit of the code does not work, the pypy kernel shows up on jupyter notebook.

            cmd codes for jupyter notebook installation:

            ...

            ANSWER

            Answered 2020-Dec-31 at 16:41

            It looks like you're trying to use source in a command prompt on Windows. That won't work, source is for POSIX environments.

            Instead, try:

            Source https://stackoverflow.com/questions/65517020

            QUESTION

            Matching Enum with Struct::default() value/ Error: expected tuple struct or tuple variant, found associated function `A::default`
            Asked 2020-Dec-30 at 22:46

            I'd like to match enums that have struct values. When I'm doing matching an enum, it seems I'm required to provide a value for the Enum field if it has one. I'd like to set this value to A::default(), and reference the values of this default, but that gives me the error: expected tuple struct or tuple variant, found associated function `A::default. How can I work around this? Playground

            ...

            ANSWER

            Answered 2020-Dec-30 at 22:00

            You don't care about the struct field value, so use .. to ignore the value:

            Source https://stackoverflow.com/questions/65514026

            QUESTION

            How can I ask git for the name of a repository's default branch?
            Asked 2020-Dec-21 at 21:59

            Creating a repo with a different default branch than master is easy with git init --initial-branch=main myRepo, or git config --global init.defaultBranch main, for instance (see How can I create a Git repository with the default branch name other than "master"? for details).

            I want the inverse: when building git scripts that need the name of the default integration branch, is the local git metadata aware of what this branch name is, so it can tell me, and if so, how do we get at that data?

            I thought something like git rev-parse --abbrev-ref origin/HEAD would work, but that just seems to show what the default branch was of the repo it was cloned from, at the time of cloning, provided that the remote we cloned from was named origin.

            ...

            ANSWER

            Answered 2020-Nov-19 at 02:28

            This seems to work well in all edge cases I've tried it with locally:

            git remote show $(git remote show|tail -1)|grep 'HEAD branch'|awk '{print $NF}'

            Source https://stackoverflow.com/questions/64904364

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install MAST

            You can download it from GitHub.

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