synapser | An R package providing programmatic access to Synapse | Collaboration library

 by   Sage-Bionetworks R Version: 1.1.0-rc License: Apache-2.0

kandi X-RAY | synapser Summary

kandi X-RAY | synapser Summary

synapser is a R library typically used in Web Site, Collaboration applications. synapser has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

The synapser package provides an interface to Synapse, a collaborative workspace for reproducible data intensive research projects, providing support for:. The synapser package lets you communicate with the Synapse platform to create collaborative data analysis projects and access data using the R programming language. Other Synapse clients exist for Python, Java, and the web browser.

            kandi-support Support

              synapser has a low active ecosystem.
              It has 27 star(s) with 21 fork(s). There are 14 watchers for this library.
              There were 1 major release(s) in the last 12 months.
              There are 2 open issues and 37 have been closed. On average issues are closed in 148 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of synapser is 1.1.0-rc

            kandi-Quality Quality

              synapser has 0 bugs and 0 code smells.

            kandi-Security Security

              synapser has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              synapser code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              synapser is licensed under the Apache-2.0 License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              synapser releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.
              It has 21733 lines of code, 16 functions and 139 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

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            synapser Key Features

            No Key Features are available at this moment for synapser.

            synapser Examples and Code Snippets

            No Code Snippets are available at this moment for synapser.

            Community Discussions


            Spring Data Not Autowiring Entity from Dependency JAR
            Asked 2017-Feb-21 at 00:27

            I have a WAR containing a dependency JAR. The JAR contains cross-cutting concerns and is written by me as well. I'm using Spring 4.2.3 and Spring-data-jpa 1.9.1 and my configuration is annotation based. I deploy to Wildfly 10.1.0.

            The JAR compiles fine and I install it to my local Maven Repo. From the WAR, the JAR is included as a dependency. So far so good.

            On the Spring Configuration file of the WAR, I import the Spring Configuration file of the JAR.

            Now, when I have normal Spring Beans (Service or Component), everything works fine and Spring finds and resolves all dependencies and Spring Beans in my JAR, which I can then subsequently invoke from the code in my WAR.

            However, as soon as I add a Repository and an Entity, Spring does not find the Entity and subsequently my WAR compiles but it does not deploy. I must note that all of this works if I put the JAR code in my WAR direcetly. I think I'm missing a configuration, but I'm not sure where else to look.

            Any assistance will be greatly appreciated. Code and Stack-trace below:

            On deployment, I get the following error: Error creating bean with name 'synapseRepo': Invocation of init method failed; nested exception is java.lang.IllegalArgumentException: Not an managed type: class

            So, the error is pretty straightforward, but I'm not sure what else it is that I'm missing to let Spring know about my Entity.


            JAR Code for Configuration:



            Answered 2017-Feb-21 at 00:27

            Your SynapseRepo and CommandRepo interface should have the @Repository annotation.

            However the root of the problem is that you have a JPA configuration in your WAR file and a JPA configuration in your JAR. Because the names, properties files, etc. will lead to beans overriding each other. You will need to spend the time to make them unique. You can follow the instructions at


            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install synapser

            synapser is available as a ready-built package for Microsoft Windows and Mac OSX. For Linux systems, it is available to install from source. Please also check out our System Dependencies article for instructions on how to install system dependencies on Linux environments.


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            gh repo clone Sage-Bionetworks/synapser

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