ZIBR | Zero-Inflated Beta Random Effect model
kandi X-RAY | ZIBR Summary
kandi X-RAY | ZIBR Summary
ZIBR is a R library. ZIBR has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.
The longitudinal microbiome compositional data are highly skewed, bounded in [0,1), and often sparse with many zeros. In addition, the observations from repeated measures are correlated. We propose a two-part zero-inflated Beta regression model with random effects (ZIBR) for testing the association between microbial abundance and clinical covariates for longitudinal microbiome data. The model includes a logistic component to model presence/absence of the microbe in samples and a Beta component to model non-zero microbial abundance and each component includes a random effect to take into account the correlation among repeated measurements on the same subject.
The longitudinal microbiome compositional data are highly skewed, bounded in [0,1), and often sparse with many zeros. In addition, the observations from repeated measures are correlated. We propose a two-part zero-inflated Beta regression model with random effects (ZIBR) for testing the association between microbial abundance and clinical covariates for longitudinal microbiome data. The model includes a logistic component to model presence/absence of the microbe in samples and a Beta component to model non-zero microbial abundance and each component includes a random effect to take into account the correlation among repeated measurements on the same subject.
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Quality
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Support
ZIBR has a low active ecosystem.
It has 24 star(s) with 5 fork(s). There are 4 watchers for this library.
It had no major release in the last 12 months.
There are 0 open issues and 11 have been closed. On average issues are closed in 484 days. There are 1 open pull requests and 0 closed requests.
It has a neutral sentiment in the developer community.
The latest version of ZIBR is v0.1
Quality
ZIBR has 0 bugs and 0 code smells.
Security
ZIBR has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
ZIBR code analysis shows 0 unresolved vulnerabilities.
There are 0 security hotspots that need review.
License
ZIBR is licensed under the MIT License. This license is Permissive.
Permissive licenses have the least restrictions, and you can use them in most projects.
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ZIBR releases are available to install and integrate.
Installation instructions, examples and code snippets are available.
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ZIBR Key Features
No Key Features are available at this moment for ZIBR.
ZIBR Examples and Code Snippets
ZIBR (Zero-Inflated Beta Random Effect model),Examples
R
Lines of Code : 190License : Permissive (MIT)
Lines of Code : 190License : Permissive (MIT)
Copysim <- simulate_zero_inflated_beta_random_effect_data(
subject.n=100,time.n=5,
X = as.matrix(c(rep(0,50*5),rep(1,50*5))),
Z = as.matrix(c(rep(0,50*5),rep(1,50*5))),
alpha = as.matrix(c(-0.5,1)),
beta = as.matrix(c(-0.5,0.5)),
ZIBR (Zero-Inflated Beta Random Effect model),Installation
RLines of Code : 3License : Permissive (MIT)
Lines of Code : 3License : Permissive (MIT)Copyinstall.packages("devtools")
devtools::install_github("chvlyl/ZIBR")
library(ZIBR)
ZIBR (Zero-Inflated Beta Random Effect model),Basic Usage
RLines of Code : 1License : Permissive (MIT)
Lines of Code : 1License : Permissive (MIT)Copyzibr(logistic.cov=logistic.cov,beta.cov=beta.cov,Y=Y,subject.ind=subject.ind,time.ind=time.ind)
Community Discussions
No Community Discussions are available at this moment for ZIBR.Refer to stack overflow page for discussions.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install ZIBR
You can install our ZIBR package from Github.
Support
Feel free to contact me (Eric Z. Chen) by chvlyl AT gmail.com.
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