seriation | Infrastructure for Ordering using Seriation - R Package | Build Tool library

by mhahsler R Version: seriation_1.3.6 License: GPL-3.0

X-Ray Key Features Code Snippets(2)Community Discussions(4)Vulnerabilities Install Support

kandi X-RAY | seriation Summary

seriation is a R library typically used in Utilities, Build Tool applications. seriation has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

This package provides the infrastructure for ordering objects with an implementation of several seriation/sequencing/ordination techniques to reorder matrices, dissimilarity matrices, and dendrograms (see below for a full list). Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT).

Support

Quality

Security

License

Reuse

Support

seriation has a low active ecosystem.

It has 68 star(s) with 14 fork(s). There are 6 watchers for this library.

It had no major release in the last 12 months.

There are 2 open issues and 13 have been closed. On average issues are closed in 3 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of seriation is seriation_1.3.6

Quality

seriation has no bugs reported.

Security

seriation has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

seriation is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

seriation releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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seriation Key Features

No Key Features are available at this moment for seriation.

seriation Examples and Code Snippets

seriation - Infrastructure for Ordering Objects Using Seriation - R package,Usage

Lines of Code : 23

License : Strong Copyleft (GPL-3.0)

Copy

library(seriation)
data("iris")
x <- as.matrix(iris[-5])
x <- x[sample(1:nrow(x)),]

d <- dist(x)
order <- seriate(d)
order

object of class ‘ser_permutation’, ‘list’
contains permutation vectors for 1-mode data

  vector length seriation

seriation - Infrastructure for Ordering Objects Using Seriation - R package,Installation

Lines of Code : 3

License : Strong Copyleft (GPL-3.0)

Copy

install.packages("seriation")

library("devtools")
install_github("mhahsler/seriation")

Community Discussions

Trending Discussions on seriation

Add percentage labels inside bars in circos.barplot in Circlize

How do I sort the output of SessionInfo() in R?

install.packages(...) fails on Windows 10

How to install package in R

QUESTION

Add percentage labels inside bars in circos.barplot in Circlize

Asked 2021-May-12 at 17:22

I was able to create a stacked bar chart like this:

...

ANSWER

Answered 2021-May-12 at 17:22

I figured it out by modifying the code of the circos.barplot function.

The labels are drawn in a second loop after the rectangles so that the rectangles are not drawn over the labels.

Source https://stackoverflow.com/questions/67504090

QUESTION

How do I sort the output of SessionInfo() in R?

Asked 2018-Jun-13 at 20:49

I want to sort the output of sessionInfo(). I tried doing it using lapply() but I am missing quite a few things.

For instance, when I tried this command:

...

ANSWER

Answered 2017-Jan-22 at 20:09

si <- sessionInfo()
si[] <- lapply(si, function(x) if (is.list(x)) x[sort(names(x))] else sort(x))
si

# R version 3.3.2 (2016-10-31)
# Platform: x86_64-apple-darwin13.4.0 (64-bit)
# Running under: OS X El Capitan 10.11.6
# 
# locale:
#   [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
# 
# attached base packages:
#   [1] base      datasets  graphics  grDevices methods   stats     utils    
# 
# loaded via a namespace (and not attached):
#   [1] tools_3.3.2

Source https://stackoverflow.com/questions/41794350

QUESTION

install.packages(...) fails on Windows 10

Asked 2018-May-18 at 09:30

I am trying to install the dplyr package from Visual Studio 2017. It has a dependency on pillar.

When I perform an install from the command line, I get:

...

ANSWER

Answered 2018-May-05 at 19:25

I doubt this has anything to do with the pillar package, but perhaps with the fact that this package is installed from source (unlike the default which is to install from binary). This problem will eventually resolve itself as the binary version of pillar 1.2.2 becomes available on your CRAN mirror (it's already there on CRAN and on https://cloud.r-project.org/web/packages/pillar/index.html).

What's the value of getOption("repos") on your system?

The mis-encoding of non-ASCII characters in this particular scenario feels like a problem which is best avoided by choosing an ASCII-only and space-free directory name for your home (e.g. C:\Users\jverstry instead of your current setting). To rule out a problem with Visual Studio, you could try installing the package from RGui or from the R terminal, please double-check that the installation path for the package is the same.

Source https://stackoverflow.com/questions/50191556

QUESTION

How to install package in R

Asked 2017-Aug-03 at 09:29

I want to install package in R : nloptr, seriation, pbkrtest, NbClust, cluster, car, scales, fpc, mclust, apcluster, vegan to use it on my powerbi for k means clustering.

I already install R 3.3.1 in my windows. I open my R like this:

I already tried use two commands to install packages like this:

...

ANSWER

Answered 2017-Aug-02 at 07:33

The repository on GitHub you link to is not in the valid R package structure and thus not installable as such. You are best downloading the files, extracting them locally and sourcing (using function source, see help("source")) any R scripts you may want to use.

As for the rest, there is no function called install.packages.zip that would come with base R installation. When I install packages from local zip files (rarely, though), I use

Source https://stackoverflow.com/questions/45454204

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install seriation

Stable CRAN version: install from within R with. Current development version: Download package from AppVeyor or install from GitHub (needs devtools).

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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