ECS | Code for Guo and Gregg, GIM. 2018

 by   mhguo1 R Version: Current License: MIT

kandi X-RAY | ECS Summary

kandi X-RAY | ECS Summary

ECS is a R library. ECS has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Below, we describe the code used in Guo MH and Gregg AR. "Estimating yields of prenatal carrier screening and implications for design of expanded carrier screening panels." Genetics in Medicine. 2019. Python v2.7 and R v3.1 were used throughout. #Download parsed ClinVar data: git clone #Parse and subset ClinVar data python subset_clinvar.py clinvar_subset_table.txt. #Generate carrier frequencies Rscript sum_AF.R. #Generate plots Rscript plot.R.
Support
    Quality
      Security
        License
          Reuse

            kandi-support Support

              ECS has a low active ecosystem.
              It has 1 star(s) with 1 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              ECS has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of ECS is current.

            kandi-Quality Quality

              ECS has 0 bugs and 0 code smells.

            kandi-Security Security

              ECS has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              ECS code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              ECS is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              ECS releases are not available. You will need to build from source code and install.
              It has 24 lines of code, 0 functions and 1 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of ECS
            Get all kandi verified functions for this library.

            ECS Key Features

            No Key Features are available at this moment for ECS.

            ECS Examples and Code Snippets

            No Code Snippets are available at this moment for ECS.

            Community Discussions

            QUESTION

            How can I get output from boto3 ecs execute_command?
            Asked 2022-Jan-13 at 19:35

            I have an ECS task running on Fargate on which I want to run a command in boto3 and get back the output. I can do so in the awscli just fine.

            ...

            ANSWER

            Answered 2022-Jan-04 at 23:43

            Ok, basically by reading the ssm session manager plugin source code I came up with the following simplified reimplementation that is capable of just grabbing the command output: (you need to pip install websocket-client construct)

            Source https://stackoverflow.com/questions/70367030

            QUESTION

            boto3: execute_command inside python script
            Asked 2022-Jan-13 at 19:33

            I am trying to run a command to an ecs container managed by fargate. I can establish connection as well as execute successfully but I cannot get the response from said command inside my python script.

            ...

            ANSWER

            Answered 2021-Aug-05 at 14:20

            A quick solution is to use logging instead of pprint:

            Source https://stackoverflow.com/questions/68569452

            QUESTION

            How to detect if a device can play Dolby Atmos Sound with Javascript
            Asked 2021-Dec-24 at 06:57

            I am looking for a way to detect if the device I am using can support Dolby Atmos sounds.

            After searching around I found this call.

            https://github.com/w3c/media-capabilities/blob/main/explainer.md#spatial-audio

            ...

            ANSWER

            Answered 2021-Dec-24 at 06:57

            Detecting the codec doesn't necessarily detect whether the system can support Dolby Atmos

            Correct.

            What reliable way is there to detect if your system will truly support Dolby Atmos whether its with a receiver or a Dolby Atmos compliant sound bar.

            Unfortunately, this undetectable from the browser.

            The browser itself and even the OS doesn't always know what is downstream. Sorry for the bad news!

            Source https://stackoverflow.com/questions/70263091

            QUESTION

            Package built by Poetry is missing runtime dependencies
            Asked 2021-Nov-04 at 02:15

            I've been working on a project which so far has just involved building some cloud infrastructure, and now I'm trying to add a CLI to simplify running some AWS Lambdas. Unfortunately both the sdist and wheel packages built using poetry build don't seem to include the dependencies, so I have to manually pip install all of them to run the command. Basically I

            1. run poetry build in the project,
            2. cd "$(mktemp --directory)",
            3. python -m venv .venv,
            4. . .venv/bin/activate,
            5. pip install /path/to/result/of/poetry/build/above, and then
            6. run the new .venv/bin/ executable.

            At this point the executable fails, because pip did not install any of the package dependencies. If I pip show PACKAGE the Requires line is empty.

            The Poetry manual doesn't seem to specify how to link dependencies to the built package, so what do I have to do instead?

            I am using some optional dependencies, could that be interfering with the build process? To be clear, even non-optional dependencies do not show up in the package dependencies.

            pyproject.toml:

            ...

            ANSWER

            Answered 2021-Nov-04 at 02:15

            This appears to be a bug in Poetry. Or at least it's not clear from the documentation what the expected behavior would be in a case such as yours.

            In your pyproject.toml, you specify two dependencies as required in this section:

            Source https://stackoverflow.com/questions/69763090

            QUESTION

            How to run a Fargate Task on an existing ecs cluster using aws cdk
            Asked 2021-Oct-25 at 13:53

            I have an ECS cluster that will be created by my cdk stack. Before my ECS service stack deployment I have to run a fargate task to generate the build files and configs for my application. I want to run a standalone task inside an existing Ecs cluster.

            ...

            ANSWER

            Answered 2021-Oct-25 at 13:53

            There are two questions. I Will try to answer both:

            1. First of all you need to run the Fargate task via CDK

            you need to create a Rule which runs your ECS task by schedule (or some else event)

            Source https://stackoverflow.com/questions/69680148

            QUESTION

            `aws ecs execute-command` results in `TargetNotConnectedException` `The execute command failed due to an internal error`
            Asked 2021-Sep-21 at 06:20

            I am running a Docker image on an ECS cluster to shell into it and run some simple tests. However when I run this:

            ...

            ANSWER

            Answered 2021-Sep-21 at 06:20

            This utility should be able to figure out what's wrong with your setup. Can you give it a try?

            Source https://stackoverflow.com/questions/69261159

            QUESTION

            Interactive shell in Docker image with Amazon ECS with `aws ecs run-task` followed by `aws ecs execute-command`
            Asked 2021-Sep-20 at 16:07

            I would like to launch an interactive shell into a public Docker image on my AWS ECS/Fargate cluster to run network/connectivity tests from inside the cluster.

            It seems the official way to do this is with aws ecs run-task followed by aws ecs execute-command [1][2]

            I'd like to use existing, public Docker Hub images rather than build custom images if possible.

            If I run do run-task with no command or the default command, the task exits and execute-command won't work on an exited task.

            ...

            ANSWER

            Answered 2021-Sep-20 at 16:07

            I had the same issue. I was finally able to get a container to sit "idle" with the following command inside the Task Definition:

            Source https://stackoverflow.com/questions/69257527

            QUESTION

            EFS volume bind auto detaching/reattaching on every `terraform apply` for ECS task definition
            Asked 2021-Sep-20 at 01:46

            I am currently using AWS ECS for my service deployment. For the shared volumes, I am binding some EFS volumes.

            Here is my task definition:

            ...

            ANSWER

            Answered 2021-Sep-16 at 00:07

            If you apply your TF config you should see that no changes are actually performed. If you check TF docs for efs_volume_configuration you will see that it has number of attributes. Some of them will be default, such as your root_directory which you don't specify. TF may need to pick up those default values after your initial apply. Thus later you may seem them in your subsequent terraform plan.

            Source https://stackoverflow.com/questions/69103478

            QUESTION

            How to automate deployment to ECS Fargate when new image is pushed to ECR repository
            Asked 2021-Sep-11 at 08:03

            Firstly, this is specific to CDK - I know there are plenty of questions/answers around this topic out there but none of them are CDK specific.

            Given that best practices dictate that a Fargate deployment shouldn't look for the 'latest' tag in an ECR repository, how could one set up a CDK pipeline when using ECR as a source?

            In a multi-repository application where each service is in it's own repository (where those repositories would have their own CDK CodeBuild deployments to set up building and pushing to ECR), how would the infrastructure CDK pipeline be aware of new images being pushed to an ECR repository and be able to deploy that new image to the ECS Fargate service?

            Since a task definition has to specify an image tag (else it'll look for 'latest' which may not exist), this seems to be impossible.

            As a concrete example, say I have the following 2 repositories:

            • CdkInfra
              • One of these repositories would be created for each customer to create the full environment for their application
            • SomeService
              • Actual application code
              • Only one of this repository should exist and re-used by multiple CdkInfra projects
              • cdk directory defining the CodeBuild project so when a push to master is detected, the service is built and the image pushed to ECR

            The expected workflow would be as such:

            1. SomeService repository is updated and so a new image is pushed to ECR
            2. The CdkInfra pipeline should detect that a tracked ECR repository has a new image
            3. The CdkInfra pipeline updates the Fargate task definition to reference the new image's tag
            4. The Fargate service pulls the new image and deploys it

            I know there is currently a limit with CodeDeploy not supporting ECS deployments due to CFN not supporting them, but it seems that CodePipelineActions has the ability to set up an EcrSourceAction which may be able to achieve this, however I've been unable to get this to work so far.

            Is this possible at all, or am I stuck waiting until CFN support ECS CodeDeploy functionality?

            ...

            ANSWER

            Answered 2021-Aug-06 at 14:15

            You could store the name of the latest tag in an AWS Systems Manager (SSM) parameter (see the list here), and dynamically update it when you deploy new images to ECR.

            Then, you could use the AWS SDK to fetch the value of the parameter during your CDK deploy, and then pass that value to your Fargate deployment.

            The following CDK stack written in Python uses the value of the YourSSMParameterName parameter (in my AWS account) as the name of an S3 bucket:

            Source https://stackoverflow.com/questions/68676126

            QUESTION

            How to enable container insights on already created ECS Fargate using AWS Console / GUI
            Asked 2021-Sep-10 at 00:32

            How to enable container insights on already created ECS Fargate? I am running multiple ECS clusters for which container insight was not enabled while creating those. Now I have enabled that option in Account Settings. But it is for only the new cluster which I will create after enabling it. But how do I enable it on my existing cluster. Note I am running ECS Fargate and not ec2 instances.

            Any help or documents is appreciated.

            Note: https://docs.aws.amazon.com/AmazonCloudWatch/latest/monitoring/deploy-container-insights-ECS-cluster.html

            ...

            ANSWER

            Answered 2021-Aug-26 at 11:28

            AWS documentation does not mention any way to do via the GUI, but AWS has launched a browser based Command line for executing AWS Commands.Cloudshell.

            Just search for the service and Paste the command there. It should work.

            That should be the way to do it until AWS adds the configuration option to ECS Update UI.

            Source https://stackoverflow.com/questions/68932205

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install ECS

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries
            CLONE
          • HTTPS

            https://github.com/mhguo1/ECS.git

          • CLI

            gh repo clone mhguo1/ECS

          • sshUrl

            git@github.com:mhguo1/ECS.git

          • Stay Updated

            Subscribe to our newsletter for trending solutions and developer bootcamps

            Agree to Sign up and Terms & Conditions

            Share this Page

            share link