ECS | Code for Guo and Gregg, GIM. 2018
kandi X-RAY | ECS Summary
kandi X-RAY | ECS Summary
Below, we describe the code used in Guo MH and Gregg AR. "Estimating yields of prenatal carrier screening and implications for design of expanded carrier screening panels." Genetics in Medicine. 2019. Python v2.7 and R v3.1 were used throughout. #Download parsed ClinVar data: git clone #Parse and subset ClinVar data python subset_clinvar.py clinvar_subset_table.txt. #Generate carrier frequencies Rscript sum_AF.R. #Generate plots Rscript plot.R.
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QUESTION
I have an ECS task running on Fargate on which I want to run a command in boto3 and get back the output. I can do so in the awscli just fine.
...ANSWER
Answered 2022-Jan-04 at 23:43Ok, basically by reading the ssm session manager plugin source code I came up with the following simplified reimplementation that is capable of just grabbing the command output:
(you need to pip install websocket-client construct
)
QUESTION
I am trying to run a command to an ecs container managed by fargate. I can establish connection as well as execute successfully but I cannot get the response from said command inside my python script.
...ANSWER
Answered 2021-Aug-05 at 14:20A quick solution is to use logging
instead of pprint
:
QUESTION
I am looking for a way to detect if the device I am using can support Dolby Atmos sounds.
After searching around I found this call.
https://github.com/w3c/media-capabilities/blob/main/explainer.md#spatial-audio
...ANSWER
Answered 2021-Dec-24 at 06:57Detecting the codec doesn't necessarily detect whether the system can support Dolby Atmos
Correct.
What reliable way is there to detect if your system will truly support Dolby Atmos whether its with a receiver or a Dolby Atmos compliant sound bar.
Unfortunately, this undetectable from the browser.
The browser itself and even the OS doesn't always know what is downstream. Sorry for the bad news!
QUESTION
I've been working on a project which so far has just involved building some cloud infrastructure, and now I'm trying to add a CLI to simplify running some AWS Lambdas. Unfortunately both the sdist and wheel packages built using poetry build
don't seem to include the dependencies, so I have to manually pip install
all of them to run the command. Basically I
- run
poetry build
in the project, cd "$(mktemp --directory)"
,python -m venv .venv
,. .venv/bin/activate
,pip install /path/to/result/of/poetry/build/above
, and then- run the new .venv/bin/ executable.
At this point the executable fails, because pip
did not install any of the package dependencies. If I pip show PACKAGE
the Requires
line is empty.
The Poetry manual doesn't seem to specify how to link dependencies to the built package, so what do I have to do instead?
I am using some optional dependencies, could that be interfering with the build process? To be clear, even non-optional dependencies do not show up in the package dependencies.
pyproject.toml:
...ANSWER
Answered 2021-Nov-04 at 02:15This appears to be a bug in Poetry. Or at least it's not clear from the documentation what the expected behavior would be in a case such as yours.
In your pyproject.toml
, you specify two dependencies as required in this section:
QUESTION
I have an ECS cluster that will be created by my cdk stack. Before my ECS service stack deployment I have to run a fargate task to generate the build files and configs for my application. I want to run a standalone task inside an existing Ecs cluster.
...ANSWER
Answered 2021-Oct-25 at 13:53There are two questions. I Will try to answer both:
- First of all you need to run the Fargate task via CDK
you need to create a Rule which runs your ECS task by schedule (or some else event)
QUESTION
I am running a Docker image on an ECS cluster to shell into it and run some simple tests. However when I run this:
...ANSWER
Answered 2021-Sep-21 at 06:20This utility should be able to figure out what's wrong with your setup. Can you give it a try?
QUESTION
I would like to launch an interactive shell into a public Docker image on my AWS ECS/Fargate cluster to run network/connectivity tests from inside the cluster.
It seems the official way to do this is with aws ecs run-task
followed by aws ecs execute-command
[1][2]
I'd like to use existing, public Docker Hub images rather than build custom images if possible.
If I run do run-task
with no command or the default command, the task exits and execute-command
won't work on an exited task.
ANSWER
Answered 2021-Sep-20 at 16:07I had the same issue. I was finally able to get a container to sit "idle" with the following command inside the Task Definition:
QUESTION
I am currently using AWS ECS for my service deployment. For the shared volumes, I am binding some EFS volumes.
Here is my task definition:
...ANSWER
Answered 2021-Sep-16 at 00:07If you apply
your TF config you should see that no changes are actually performed. If you check TF docs for efs_volume_configuration you will see that it has number of attributes. Some of them will be default, such as your root_directory
which you don't specify. TF may need to pick up those default values after your initial apply
. Thus later you may seem them in your subsequent terraform plan
.
QUESTION
Firstly, this is specific to CDK - I know there are plenty of questions/answers around this topic out there but none of them are CDK specific.
Given that best practices dictate that a Fargate deployment shouldn't look for the 'latest' tag in an ECR repository, how could one set up a CDK pipeline when using ECR as a source?
In a multi-repository application where each service is in it's own repository (where those repositories would have their own CDK CodeBuild deployments to set up building and pushing to ECR), how would the infrastructure CDK pipeline be aware of new images being pushed to an ECR repository and be able to deploy that new image to the ECS Fargate service?
Since a task definition has to specify an image tag (else it'll look for 'latest' which may not exist), this seems to be impossible.
As a concrete example, say I have the following 2 repositories:
- CdkInfra
- One of these repositories would be created for each customer to create the full environment for their application
- SomeService
- Actual application code
- Only one of this repository should exist and re-used by multiple CdkInfra projects
cdk
directory defining the CodeBuild project so when a push to master is detected, the service is built and the image pushed to ECR
The expected workflow would be as such:
- SomeService repository is updated and so a new image is pushed to ECR
- The CdkInfra pipeline should detect that a tracked ECR repository has a new image
- The CdkInfra pipeline updates the Fargate task definition to reference the new image's tag
- The Fargate service pulls the new image and deploys it
I know there is currently a limit with CodeDeploy not supporting ECS deployments due to CFN not supporting them, but it seems that CodePipelineActions has the ability to set up an EcrSourceAction which may be able to achieve this, however I've been unable to get this to work so far.
Is this possible at all, or am I stuck waiting until CFN support ECS CodeDeploy functionality?
...ANSWER
Answered 2021-Aug-06 at 14:15You could store the name of the latest tag in an AWS Systems Manager (SSM) parameter (see the list here), and dynamically update it when you deploy new images to ECR.
Then, you could use the AWS SDK to fetch the value of the parameter during your CDK deploy, and then pass that value to your Fargate deployment.
The following CDK stack written in Python uses the value of the YourSSMParameterName
parameter (in my AWS account) as the name of an S3 bucket:
QUESTION
How to enable container insights on already created ECS Fargate? I am running multiple ECS clusters for which container insight was not enabled while creating those. Now I have enabled that option in Account Settings. But it is for only the new cluster which I will create after enabling it. But how do I enable it on my existing cluster. Note I am running ECS Fargate and not ec2 instances.
Any help or documents is appreciated.
...ANSWER
Answered 2021-Aug-26 at 11:28AWS documentation does not mention any way to do via the GUI, but AWS has launched a browser based Command line for executing AWS Commands.Cloudshell.
Just search for the service and Paste the command there. It should work.
That should be the way to do it until AWS adds the configuration option to ECS Update UI.
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