opencpu | OpenCPU system for embedded scientific computation | Code Editor library
kandi X-RAY | opencpu Summary
kandi X-RAY | opencpu Summary
Producing and Reproducing Results. A system for embedded scientific computing and reproducible research with R. The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange with R. This provides a reliable and scalable foundation for statistical services or building R web applications. The OpenCPU server runs either as a single-user development server within the interactive R session, or as a multi-user Linux stack based on Apache2. The entire system is fully open source and permissively licensed. The OpenCPU website has detailed documentation and example apps.
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Community Discussions
Trending Discussions on opencpu
QUESTION
According to the openCPU documentation, there are some default HTTP status codes and return types for a few situations. For example, when R raises an error, openCPU returns code 400
with a response type of text/plain
.
While I believe it should be possible to control those things, is it possible to customize any of those things directly from R? For example, what if I wanted to return a JSON for a specific error in my R function, with a status code 503?
...ANSWER
Answered 2021-Apr-17 at 08:30You can change their R package behavior by forking opencpu or via a local copy i.e. not sure if package allows this like a functionality but the responses are configured in res.R
For e.g. this method in the link above uses 400
for error.
QUESTION
I am trying to update a R app on the OpenCPU public server (https://cloud.opencpu.org/). With the new 2.2.0 OpenCPU release, all previous user payloads have apparently been wiped out (including mine). The CI webhook is still up and running though. However, it systematically rejects the R package that I am trying to push through. Note that my app/CI used to work very well with previous OpenCPU versions. Error given is "server timeout". Could not find any relevant info for this in the docs (OpenCPU help) Is the public CI flow still available? Are other devs experiencing the same issue?
...ANSWER
Answered 2020-Oct-11 at 11:49I can now confirm that the OpenCPU server is actually fully operational. My web-app is now fixed. Works well. The problem was from my side.
Sharing here my findings, so it can be useful for others:
- My custom R package was trying to import too many external packages. I trimmed down the imports list to the strict minimum.
- I set my custom package
lazyload
flag tofalse
The CI webhook now processes any new push to the Github branch and the corresponding package gets rebuilt smoothly server side.
QUESTION
I'm trying to build a Shiny App that monitors my running containers on a host machine, and here is what I have tried so far. Question is how can I display the outputs, in this case (docker ps -a) contents in the mainPanel? I'm new to Rshiny, so any help will be much appreciated!
...ANSWER
Answered 2020-Sep-02 at 21:11You can use the other ssh_exec_internal
instead to collect the output of your docker command. Something like:
QUESTION
I have an image based on opencpu/base. It starts an apache based server, and then invokes R scripts everytime sombody calls an API endpoint.
One of those scripts tries to write a file to a location in the container. When I mount a folder into that location, it works on my Windows machine, but not on Ubuntu.
I've tried using named volumes on Ubuntu, but it does not work either. When I run bash inside the container interactively on Ubuntu, I can write and read the mounted volume just fine. But the apache process cannot.
Does anybody have some hints what could be going on here?
...ANSWER
Answered 2020-Sep-02 at 19:35When you log in interactively to the container, you will have root permissions. Apache usually runs as another user (www-data), and that user must have read permissions on the folder that you want it to read.
Make sure that the permissions of the folder matches the user that will read it.
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