mashr | An R package for multivariate adaptive shrinkage | Testing library

 by   stephenslab R Version: 0.2.49 License: Non-SPDX

kandi X-RAY | mashr Summary

kandi X-RAY | mashr Summary

mashr is a R library typically used in Testing applications. mashr has no bugs, it has no vulnerabilities and it has low support. However mashr has a Non-SPDX License. You can download it from GitHub.

This package implements methods to estimate and test many effects in many conditions (or many effects on many outcomes). Empirical Bayes methods are used to estimate patterns of similarity among conditions, then exploit these patterns of similarity among conditions to improve accuracy of effect estimates. See Urbut et al for details.
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            kandi-support Support

              mashr has a low active ecosystem.
              It has 53 star(s) with 13 fork(s). There are 12 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 30 open issues and 42 have been closed. On average issues are closed in 177 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of mashr is 0.2.49

            kandi-Quality Quality

              mashr has 0 bugs and 0 code smells.

            kandi-Security Security

              mashr has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              mashr code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              mashr has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              mashr releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.
              It has 10900 lines of code, 0 functions and 84 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

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            mashr Key Features

            No Key Features are available at this moment for mashr.

            mashr Examples and Code Snippets

            mashr: Multivariate Adaptive Shrinkage in R,Setup
            Rdot img1Lines of Code : 3dot img1License : Non-SPDX (NOASSERTION)
            copy iconCopy
            install.packages("mashr")
            
            install.packages("remotes")
            remotes::install_github("stephenslab/mashr")
              

            Community Discussions

            QUESTION

            TypeError: __init__() got an unexpected keyword argument 'as_tuple'
            Asked 2022-Mar-29 at 23:24

            While I am testing my API I recently started to get the error below.

            ...

            ANSWER

            Answered 2022-Mar-29 at 13:29

            As of version 2.1.0, werkzeug has removed the as_tuple argument to Client. Since Flask wraps werkzeug and you're using a version that still passes this argument, it will fail. See the exact change on the GitHub PR here.

            You can take one of two paths to solve this:

            1. Upgrade flask

            2. Pin your werkzeug version

            Source https://stackoverflow.com/questions/71661851

            QUESTION

            Cypress component testing is not loading CSS while running testcases
            Asked 2022-Mar-29 at 20:26

            We are building web components using stencil. We compile the stencil components and create respective "React component" and import them into our projects.

            While doing so we are able to view the component as expected when we launch the react app. However when we mount the component and execute test cases using cypress we observe that the CSS for these pre built components are not getting loaded.

            cypress.json

            ...

            ANSWER

            Answered 2022-Feb-16 at 02:33

            You can try importing the css in the index.ts or index.js file that will be available in the location -> cypress/support/index.ts

            Source https://stackoverflow.com/questions/70564493

            QUESTION

            Run Gradle tests with multiple Java toolchains
            Asked 2022-Mar-16 at 17:22

            I've got a Gradle project which uses a Java version specified with the toolchain API:

            ...

            ANSWER

            Answered 2022-Mar-16 at 17:22

            I think I worked out the root cause of the issues I was experiencing, I'm posting the solution in case someone else runs into similar issues. I had the following tests configuration:

            Source https://stackoverflow.com/questions/68940966

            QUESTION

            Is there a way to unit test top-level statements in C#?
            Asked 2022-Feb-10 at 13:00

            I was fiddling with top-level statements as the entry point for a simple console app, since the new .NET 6 template use them as a default.

            Yet, as the language specification very clearly states:

            Note that the names "Program" and "Main" are used only for illustrations purposes, actual names used by compiler are implementation dependent and neither the type, nor the method can be referenced by name from source code.

            So, if I can't reference the implicit Program class and it's Main() method, would it be possible to write unit tests to check the execution flow of the top-level statements themselves? If so, how?

            ...

            ANSWER

            Answered 2022-Feb-10 at 13:00

            Yes. One option (since .NET 6) is to make the tested project's internals visible to the test project for example by adding next property to csproj:

            Source https://stackoverflow.com/questions/70645272

            QUESTION

            Why does this test fail if someone else runs it at the same time?
            Asked 2022-Feb-09 at 11:50

            I was watching a conference talk (No need to watch it to understand my question but if you're curious it's from 35m28s to 36m28s). The following test was shown:

            ...

            ANSWER

            Answered 2022-Feb-08 at 21:40

            One of the speakers said: "you can only expect that storing data to a production service works if only one copy of that test is running at a time."

            Right. Imagine if two instances of this code are running. If both Store operations execute before either Load operation takes place, the one whose Store executed first will load the wrong value.

            Consider this pattern where the two instances are called "first" and "second":

            1. First Store executes, stores first random value.
            2. Second Store starts executing, starts storing second random value.
            3. First Load is blocked on the second Store completing due to a lock internal to the database
            4. Second Load is blocked on the Store completing due to a local internal to the database.
            5. Second Store finishes and release the internal lock.
            6. First Load can now execute, it gets second random value.
            7. EXPECT_EQ fails as the first and second random values are different.

            The other speaker said: "Once you add continuous integration in the mix, the test starts failing".

            If a CI system is testing multiple instances of the code at the same time, race conditions like the example above can occur and cause tests to fail as the multiple instances race with each other.

            Source https://stackoverflow.com/questions/71041135

            QUESTION

            How to fix Error: useHref() may be used only in the context of a component
            Asked 2022-Feb-02 at 07:26

            How do I resolve this problem. I am just trying to create a test the ensures that that component renders, but for some reason keep getting this problem even though the component is already inside .

            I have read other similar questions on here, and the answers all say to put the component inside the , But that doesn't seem to be the issue for me. Please tell me what it is I'm missing?

            ** My app.tsx**

            ...

            ANSWER

            Answered 2022-Jan-21 at 19:13

            The SignUpView is missing a routing context in your test. Import a memory router and wrap the component under test so it has a provided routing context.

            Source https://stackoverflow.com/questions/70805929

            QUESTION

            Cypress, cy.visit() failed trying to load ESOCKETTIMEDOUT
            Asked 2022-Jan-08 at 14:44

            works on www.github.com

            cy.visit() failed trying to load ESOCKETTIMEDOUT

            but not on other websites

            enter code here

            ...

            ANSWER

            Answered 2021-Aug-29 at 17:25

            from: https://github.com/cypress-io/cypress/issues/7062

            1. increase timeout

              cy.visit('https://github.com/', { timeout: 30000 })

            Source https://stackoverflow.com/questions/68975352

            QUESTION

            Error running tests with flutter : "Failed to load "_test.dart": Shell subprocess ended cleanly. Did main() call exit()?"
            Asked 2021-Dec-23 at 22:29

            Whenever I add new tests to my codebase I encounter the aforementioned error message while running them.

            ...

            ANSWER

            Answered 2021-Nov-10 at 04:20

            QUESTION

            How to test if function is called with async keyword
            Asked 2021-Nov-18 at 08:11

            I want to write a simple test for my vue3 app, test should assert that specific function (updateRoute in this case) is declared with async in different components

            Note: according to my current project I can't isolate this function in a single file to make it reusable

            example:

            ...

            ANSWER

            Answered 2021-Nov-18 at 07:11

            Check if the contructor.name of the function is equal to 'AsyncFunction':

            Source https://stackoverflow.com/questions/70015672

            QUESTION

            React testing library id instead of data-testid?
            Asked 2021-Nov-03 at 10:28

            Would be any difference if I used HTML id attribute instead of data attributes like data-testid?

            Reference for the use of data-testid in testing:

            https://testing-library.com/docs/queries/bytestid/

            ...

            ANSWER

            Answered 2021-Nov-03 at 10:28

            On the surface, I don't see any technical difference.

            But in terms of readability, data-testid may notice other developers that this is used for test case specifically, while id is may be in terms of styling.

            Also id or class selectors can be changed more often if implementation changes.

            Reference:

            Making your UI tests resilient to change

            Source https://stackoverflow.com/questions/69121378

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install mashr

            Install mashr from CRAN: install.packages("mashr"). For more detailed setup instructions, see below. See the introductory vignette for an introduction to mashr. Then walk through these vignettes to learn more about mashr: Introduction to mash: data-driven covariances and Simulation with non-canonical matrices.
            Install mashr from CRAN: install.packages("mashr"). For more detailed setup instructions, see below.
            See the introductory vignette for an introduction to mashr.
            Then walk through these vignettes to learn more about mashr: Introduction to mash: data-driven covariances and Simulation with non-canonical matrices.
            The simplest and quickest to obtain mashr is to install it from CRAN:. For Mac and Windows, usually the package is precompiled, so no additional compiler setup is required. If you have Linux, and in some other rare cases, you will need to make sure that your R installation is properly set up to compile packages with C++ source; in particular, the C++ compiler programs supported by your version of R should be installed on your computer, and R should be correctly configured to call these compilers when installing packages from source. For more information, see the CRAN documentation.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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